miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 3' -58.3 NC_002794.1 + 20445 0.66 0.871167
Target:  5'- cGUGCaccGCUGgaGCCGcCUCUGCgGCc -3'
miRNA:   3'- aCAUG---CGACgaUGGCuGGGACGgCGu -5'
10946 3' -58.3 NC_002794.1 + 14024 0.66 0.871167
Target:  5'- aGUGCugguccuacugGCUGCUGgCGAUCCUuacGCCGaCGg -3'
miRNA:   3'- aCAUG-----------CGACGAUgGCUGGGA---CGGC-GU- -5'
10946 3' -58.3 NC_002794.1 + 127544 0.66 0.863896
Target:  5'- --gGCGCUGUuggucaUGCUGGCCCUGaUgGCGu -3'
miRNA:   3'- acaUGCGACG------AUGGCUGGGAC-GgCGU- -5'
10946 3' -58.3 NC_002794.1 + 85378 0.66 0.863896
Target:  5'- uUGUGCGaacaUGCU-CaCGGCCagagGCCGCGc -3'
miRNA:   3'- -ACAUGCg---ACGAuG-GCUGGga--CGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 107176 0.66 0.863896
Target:  5'- -cUACGCgGCggaGCCGGCgCCgccGCCGCc -3'
miRNA:   3'- acAUGCGaCGa--UGGCUG-GGa--CGGCGu -5'
10946 3' -58.3 NC_002794.1 + 13142 0.66 0.863896
Target:  5'- --cGCGCgggucGUcGCCGuCCCaUGCCGCAc -3'
miRNA:   3'- acaUGCGa----CGaUGGCuGGG-ACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 28703 0.66 0.863896
Target:  5'- -uUGCuGCUGCUGCCGuCgUcGCCGCc -3'
miRNA:   3'- acAUG-CGACGAUGGCuGgGaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 108585 0.66 0.863896
Target:  5'- aGUGCGaacGCUaucgcggcgcgGCCGACCUgGUCGCGg -3'
miRNA:   3'- aCAUGCga-CGA-----------UGGCUGGGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 188559 0.66 0.856425
Target:  5'- gGUACuGCUGCcgcacgUGCCGACacaacgCCcGCCGCu -3'
miRNA:   3'- aCAUG-CGACG------AUGGCUG------GGaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 118175 0.66 0.856425
Target:  5'- cGUAgGCgGCgacgcGCCGACCUUccgucGCCGCc -3'
miRNA:   3'- aCAUgCGaCGa----UGGCUGGGA-----CGGCGu -5'
10946 3' -58.3 NC_002794.1 + 75352 0.66 0.856425
Target:  5'- cGgcgACGgUucGCcACCGACCC-GCCGCGg -3'
miRNA:   3'- aCa--UGCgA--CGaUGGCUGGGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 124594 0.66 0.855667
Target:  5'- cGUGCGCgUGCUgaaggacaacgcgACCGugagcuUCCUGCCGg- -3'
miRNA:   3'- aCAUGCG-ACGA-------------UGGCu-----GGGACGGCgu -5'
10946 3' -58.3 NC_002794.1 + 86015 0.66 0.848761
Target:  5'- ---cCGCUGgcGCCGACCgUGCgGCGg -3'
miRNA:   3'- acauGCGACgaUGGCUGGgACGgCGU- -5'
10946 3' -58.3 NC_002794.1 + 153843 0.66 0.848761
Target:  5'- cGUGCGCgcguUGCcccccgccgUGCCGGCggaauuCCUGCCGUu -3'
miRNA:   3'- aCAUGCG----ACG---------AUGGCUG------GGACGGCGu -5'
10946 3' -58.3 NC_002794.1 + 57322 0.66 0.840909
Target:  5'- aGUAC-CUGCaGCgCG-UCCUGCUGCAg -3'
miRNA:   3'- aCAUGcGACGaUG-GCuGGGACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 72157 0.66 0.832877
Target:  5'- aGUACGCgcacacgcGCUGCCGGUag-GCCGCGa -3'
miRNA:   3'- aCAUGCGa-------CGAUGGCUGggaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 102694 0.66 0.832877
Target:  5'- cGUACG-UGCUGaCGGCCggGCCGCc -3'
miRNA:   3'- aCAUGCgACGAUgGCUGGgaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 188781 0.66 0.832877
Target:  5'- gGUGCaGCgguaGCgGCCGGCCCcGCCGa- -3'
miRNA:   3'- aCAUG-CGa---CGaUGGCUGGGaCGGCgu -5'
10946 3' -58.3 NC_002794.1 + 112837 0.66 0.832877
Target:  5'- aGUACgGCUGCUcgucggcgcGCCGcaGCagCUGCUGCAg -3'
miRNA:   3'- aCAUG-CGACGA---------UGGC--UGg-GACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 191570 0.67 0.824671
Target:  5'- --gACGCcGCUucGCCGAagCUGCCGCc -3'
miRNA:   3'- acaUGCGaCGA--UGGCUggGACGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.