miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 3' -58.3 NC_002794.1 + 96307 0.76 0.338163
Target:  5'- cGUACGcCUGCgacaacGCCGGCaugCUGCCGCAu -3'
miRNA:   3'- aCAUGC-GACGa-----UGGCUGg--GACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 52088 0.76 0.338163
Target:  5'- --gGCGCacaUGCUGCUGGCCgUGCUGCAg -3'
miRNA:   3'- acaUGCG---ACGAUGGCUGGgACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 19881 0.75 0.36878
Target:  5'- --cAC-CUGCgugGCCGACCgCUGCCGCGa -3'
miRNA:   3'- acaUGcGACGa--UGGCUGG-GACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 85932 0.75 0.36878
Target:  5'- gUGUugGCcggGCUcggaACCGACCCggaacgggGCCGCGg -3'
miRNA:   3'- -ACAugCGa--CGA----UGGCUGGGa-------CGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 184452 0.75 0.384786
Target:  5'- --cGCGCcGCUGCCG-CCCgcggGCCGCGc -3'
miRNA:   3'- acaUGCGaCGAUGGCuGGGa---CGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 115928 0.73 0.444287
Target:  5'- --gGCGCgGCggcggGCCGGCCC-GCCGCGu -3'
miRNA:   3'- acaUGCGaCGa----UGGCUGGGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 192138 0.73 0.444287
Target:  5'- cUGU-UGCUGCUGCCGGCgCgGUCGCGg -3'
miRNA:   3'- -ACAuGCGACGAUGGCUGgGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 108202 0.73 0.462216
Target:  5'- --gGCGCUGCgccGCCGcgccggccucgcGCCCUGCgGCAa -3'
miRNA:   3'- acaUGCGACGa--UGGC------------UGGGACGgCGU- -5'
10946 3' -58.3 NC_002794.1 + 58661 0.73 0.471322
Target:  5'- gGgcUGCUGCaGCCGGCCgUGCaCGCGc -3'
miRNA:   3'- aCauGCGACGaUGGCUGGgACG-GCGU- -5'
10946 3' -58.3 NC_002794.1 + 63150 0.73 0.48887
Target:  5'- cGUGCacucccaGCUGCUGCaCGGCCgagGCCGCGa -3'
miRNA:   3'- aCAUG-------CGACGAUG-GCUGGga-CGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 120753 0.73 0.489802
Target:  5'- --aGCGCagacuCUGCUGGCCCUGCUGCGa -3'
miRNA:   3'- acaUGCGac---GAUGGCUGGGACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 150003 0.72 0.514315
Target:  5'- --cGCGCUGCUACgaCGGCCCgcuccgagacccgGCCGCc -3'
miRNA:   3'- acaUGCGACGAUG--GCUGGGa------------CGGCGu -5'
10946 3' -58.3 NC_002794.1 + 79028 0.72 0.547089
Target:  5'- cGgcCGCcuuCUGCCGGCCCgGCCGCu -3'
miRNA:   3'- aCauGCGac-GAUGGCUGGGaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 90717 0.71 0.566678
Target:  5'- gGUGCGacgUGCU-CgCGGCCCUGUCGCu -3'
miRNA:   3'- aCAUGCg--ACGAuG-GCUGGGACGGCGu -5'
10946 3' -58.3 NC_002794.1 + 75581 0.7 0.616307
Target:  5'- --cGCGCagugGCUGCCGGCC--GCCGCGc -3'
miRNA:   3'- acaUGCGa---CGAUGGCUGGgaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 128862 0.7 0.616307
Target:  5'- --gACGCcGCUGCCgccguGACCCUuuGCCGCu -3'
miRNA:   3'- acaUGCGaCGAUGG-----CUGGGA--CGGCGu -5'
10946 3' -58.3 NC_002794.1 + 93037 0.7 0.626294
Target:  5'- gGUGCGCgGCUGCCuGGCCUUcCUGCu -3'
miRNA:   3'- aCAUGCGaCGAUGG-CUGGGAcGGCGu -5'
10946 3' -58.3 NC_002794.1 + 48720 0.7 0.626294
Target:  5'- gGUGCGCgGau-CCGACCg-GCCGCAa -3'
miRNA:   3'- aCAUGCGaCgauGGCUGGgaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 57155 0.7 0.636285
Target:  5'- --cACGCUGCUGCgcaaGGCgCC-GCCGCAc -3'
miRNA:   3'- acaUGCGACGAUGg---CUG-GGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 184948 0.7 0.636285
Target:  5'- --cGCaGCUGC-GCCGGCCCgcgcaGCCGCu -3'
miRNA:   3'- acaUG-CGACGaUGGCUGGGa----CGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.