miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 3' -58.3 NC_002794.1 + 191570 0.67 0.824671
Target:  5'- --gACGCcGCUucGCCGAagCUGCCGCc -3'
miRNA:   3'- acaUGCGaCGA--UGGCUggGACGGCGu -5'
10946 3' -58.3 NC_002794.1 + 123065 0.67 0.824671
Target:  5'- cUGgggACGaUGCagaacgUGCCGACCCUGggcCCGCAc -3'
miRNA:   3'- -ACa--UGCgACG------AUGGCUGGGAC---GGCGU- -5'
10946 3' -58.3 NC_002794.1 + 76455 0.67 0.821341
Target:  5'- cGUgGCGCccGCcccuccaccguccGCCGGCCCgGCCGCAg -3'
miRNA:   3'- aCA-UGCGa-CGa------------UGGCUGGGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 41207 0.67 0.819667
Target:  5'- --gGCGCUGCUgccACCGGccuccggggauuccuCCCacGCCGCGg -3'
miRNA:   3'- acaUGCGACGA---UGGCU---------------GGGa-CGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 131228 0.67 0.816298
Target:  5'- cGUcUGgaGUUAcCCGACCCcGCCGCc -3'
miRNA:   3'- aCAuGCgaCGAU-GGCUGGGaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 174035 0.67 0.816298
Target:  5'- cUGUACG-UGUUACCGGuCgCCUGCauaaGCAc -3'
miRNA:   3'- -ACAUGCgACGAUGGCU-G-GGACGg---CGU- -5'
10946 3' -58.3 NC_002794.1 + 64640 0.67 0.807765
Target:  5'- --aGCGcCUGCUGCCGuCCUUGCaauaucaaacCGCGa -3'
miRNA:   3'- acaUGC-GACGAUGGCuGGGACG----------GCGU- -5'
10946 3' -58.3 NC_002794.1 + 34941 0.67 0.807765
Target:  5'- ----gGCUGUccCCGGCCC-GCCGCGa -3'
miRNA:   3'- acaugCGACGauGGCUGGGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 90368 0.67 0.807765
Target:  5'- cGUGCGCgUGCaggGCCGGgUCUcGCCGUc -3'
miRNA:   3'- aCAUGCG-ACGa--UGGCUgGGA-CGGCGu -5'
10946 3' -58.3 NC_002794.1 + 138413 0.67 0.807765
Target:  5'- cGU-CGCcgGCcGCCGACUCgucgaGCCGCGg -3'
miRNA:   3'- aCAuGCGa-CGaUGGCUGGGa----CGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 12745 0.67 0.806904
Target:  5'- gGUcCGCUaccaggaGCUGCCGcUCUUGCCGCc -3'
miRNA:   3'- aCAuGCGA-------CGAUGGCuGGGACGGCGu -5'
10946 3' -58.3 NC_002794.1 + 66705 0.67 0.799081
Target:  5'- cGUACGCcGCgcCCGGCacgGCCGCc -3'
miRNA:   3'- aCAUGCGaCGauGGCUGggaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 39707 0.67 0.799081
Target:  5'- ---cCGCcggcGCUACCGACCgCUGCaGCAu -3'
miRNA:   3'- acauGCGa---CGAUGGCUGG-GACGgCGU- -5'
10946 3' -58.3 NC_002794.1 + 93331 0.67 0.796448
Target:  5'- --cACGCUGCa--CGGCCUgagcaccaagcuggUGCCGCAg -3'
miRNA:   3'- acaUGCGACGaugGCUGGG--------------ACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 193938 0.67 0.790253
Target:  5'- ---cCGCcgGCU-CCGGCCCcGCCGCc -3'
miRNA:   3'- acauGCGa-CGAuGGCUGGGaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 91832 0.67 0.790253
Target:  5'- --cGCGCUGaa--CGACgCCUGUCGCAc -3'
miRNA:   3'- acaUGCGACgaugGCUG-GGACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 180374 0.67 0.790253
Target:  5'- --gGCGCgaggacGCUGCCGGCCa-GCUGCu -3'
miRNA:   3'- acaUGCGa-----CGAUGGCUGGgaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 192048 0.68 0.772198
Target:  5'- cGgcUGCUGCUGCUGcUgCUGCUGCu -3'
miRNA:   3'- aCauGCGACGAUGGCuGgGACGGCGu -5'
10946 3' -58.3 NC_002794.1 + 76140 0.68 0.772198
Target:  5'- --cGCaGCUGUcgACCguGACCCUGCUGCu -3'
miRNA:   3'- acaUG-CGACGa-UGG--CUGGGACGGCGu -5'
10946 3' -58.3 NC_002794.1 + 121239 0.68 0.762987
Target:  5'- aGU-CGCcGCUGCCGccGCCgCcGCCGCGg -3'
miRNA:   3'- aCAuGCGaCGAUGGC--UGG-GaCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.