miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 3' -58.3 NC_002794.1 + 1268 0.69 0.68604
Target:  5'- gUGUGCGCcaGCcACCGGCCUUcuaaggaccgGCCGCu -3'
miRNA:   3'- -ACAUGCGa-CGaUGGCUGGGA----------CGGCGu -5'
10946 3' -58.3 NC_002794.1 + 12745 0.67 0.806904
Target:  5'- gGUcCGCUaccaggaGCUGCCGcUCUUGCCGCc -3'
miRNA:   3'- aCAuGCGA-------CGAUGGCuGGGACGGCGu -5'
10946 3' -58.3 NC_002794.1 + 13142 0.66 0.863896
Target:  5'- --cGCGCgggucGUcGCCGuCCCaUGCCGCAc -3'
miRNA:   3'- acaUGCGa----CGaUGGCuGGG-ACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 14024 0.66 0.871167
Target:  5'- aGUGCugguccuacugGCUGCUGgCGAUCCUuacGCCGaCGg -3'
miRNA:   3'- aCAUG-----------CGACGAUgGCUGGGA---CGGC-GU- -5'
10946 3' -58.3 NC_002794.1 + 19881 0.75 0.36878
Target:  5'- --cAC-CUGCgugGCCGACCgCUGCCGCGa -3'
miRNA:   3'- acaUGcGACGa--UGGCUGG-GACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 20445 0.66 0.871167
Target:  5'- cGUGCaccGCUGgaGCCGcCUCUGCgGCc -3'
miRNA:   3'- aCAUG---CGACgaUGGCuGGGACGgCGu -5'
10946 3' -58.3 NC_002794.1 + 28703 0.66 0.863896
Target:  5'- -uUGCuGCUGCUGCCGuCgUcGCCGCc -3'
miRNA:   3'- acAUG-CGACGAUGGCuGgGaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 34941 0.67 0.807765
Target:  5'- ----gGCUGUccCCGGCCC-GCCGCGa -3'
miRNA:   3'- acaugCGACGauGGCUGGGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 39707 0.67 0.799081
Target:  5'- ---cCGCcggcGCUACCGACCgCUGCaGCAu -3'
miRNA:   3'- acauGCGa---CGAUGGCUGG-GACGgCGU- -5'
10946 3' -58.3 NC_002794.1 + 41207 0.67 0.819667
Target:  5'- --gGCGCUGCUgccACCGGccuccggggauuccuCCCacGCCGCGg -3'
miRNA:   3'- acaUGCGACGA---UGGCU---------------GGGa-CGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 47123 0.68 0.725125
Target:  5'- aGUucCGCUGCcGCCGACUCUucgGCCGg- -3'
miRNA:   3'- aCAu-GCGACGaUGGCUGGGA---CGGCgu -5'
10946 3' -58.3 NC_002794.1 + 48352 0.69 0.715447
Target:  5'- gGUACGcCUGCUcCgCGACCa-GCCGCc -3'
miRNA:   3'- aCAUGC-GACGAuG-GCUGGgaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 48720 0.7 0.626294
Target:  5'- gGUGCGCgGau-CCGACCg-GCCGCAa -3'
miRNA:   3'- aCAUGCGaCgauGGCUGGgaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 52088 0.76 0.338163
Target:  5'- --gGCGCacaUGCUGCUGGCCgUGCUGCAg -3'
miRNA:   3'- acaUGCG---ACGAUGGCUGGgACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 53745 0.69 0.705701
Target:  5'- cGgcCGCcGCUGCCGccGCCgCUGCCgGCGg -3'
miRNA:   3'- aCauGCGaCGAUGGC--UGG-GACGG-CGU- -5'
10946 3' -58.3 NC_002794.1 + 56552 0.68 0.762987
Target:  5'- --aGCGCUcGCcGCCGcCCCcGCCGCc -3'
miRNA:   3'- acaUGCGA-CGaUGGCuGGGaCGGCGu -5'
10946 3' -58.3 NC_002794.1 + 57155 0.7 0.636285
Target:  5'- --cACGCUGCUGCgcaaGGCgCC-GCCGCAc -3'
miRNA:   3'- acaUGCGACGAUGg---CUG-GGaCGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 57322 0.66 0.840909
Target:  5'- aGUAC-CUGCaGCgCG-UCCUGCUGCAg -3'
miRNA:   3'- aCAUGcGACGaUG-GCuGGGACGGCGU- -5'
10946 3' -58.3 NC_002794.1 + 58661 0.73 0.471322
Target:  5'- gGgcUGCUGCaGCCGGCCgUGCaCGCGc -3'
miRNA:   3'- aCauGCGACGaUGGCUGGgACG-GCGU- -5'
10946 3' -58.3 NC_002794.1 + 60044 0.7 0.65625
Target:  5'- cGUcuCGCUGCUcaccuucggccGCCGcACCgUGCCGCc -3'
miRNA:   3'- aCAu-GCGACGA-----------UGGC-UGGgACGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.