miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 5' -55.6 NC_002794.1 + 151871 0.66 0.951147
Target:  5'- aUCUGCAGCccguggaaguGGCCcucgauUCGGCGCccCAGAg -3'
miRNA:   3'- -AGACGUUGu---------CCGGu-----AGCUGCGc-GUCU- -5'
10946 5' -55.6 NC_002794.1 + 145903 0.66 0.951147
Target:  5'- --cGCGACGGGggaGUCGAcCGCGCcGAg -3'
miRNA:   3'- agaCGUUGUCCgg-UAGCU-GCGCGuCU- -5'
10946 5' -55.6 NC_002794.1 + 151846 0.66 0.951147
Target:  5'- uUCgGCG--AGGCguuCAUCGGCGCGCAu- -3'
miRNA:   3'- -AGaCGUugUCCG---GUAGCUGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 37734 0.66 0.951147
Target:  5'- --aGCGGCGGcGCCGccggCGGCGgCGCGGc -3'
miRNA:   3'- agaCGUUGUC-CGGUa---GCUGC-GCGUCu -5'
10946 5' -55.6 NC_002794.1 + 104647 0.66 0.951147
Target:  5'- --cGCcgAGCAGGCCAUCagcuCGCacaGCAGAc -3'
miRNA:   3'- agaCG--UUGUCCGGUAGcu--GCG---CGUCU- -5'
10946 5' -55.6 NC_002794.1 + 56279 0.66 0.951147
Target:  5'- --aGCAGCAGGCggCAgagcaCGAUGCGCGc- -3'
miRNA:   3'- agaCGUUGUCCG--GUa----GCUGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 44551 0.66 0.946961
Target:  5'- gUCgccgGCGGCGGcGcCCGUUGACGUcacGCGGGa -3'
miRNA:   3'- -AGa---CGUUGUC-C-GGUAGCUGCG---CGUCU- -5'
10946 5' -55.6 NC_002794.1 + 139908 0.66 0.946961
Target:  5'- --aGCcGCAGGCCGUCGgACG-GCAn- -3'
miRNA:   3'- agaCGuUGUCCGGUAGC-UGCgCGUcu -5'
10946 5' -55.6 NC_002794.1 + 140186 0.66 0.946961
Target:  5'- gUCgGCGACGGcGUCGUCGAgGgGCGa- -3'
miRNA:   3'- -AGaCGUUGUC-CGGUAGCUgCgCGUcu -5'
10946 5' -55.6 NC_002794.1 + 9033 0.66 0.94653
Target:  5'- gCUGCAACcGGCUggacgagAUCaacgaggcgGugGCGCAGGc -3'
miRNA:   3'- aGACGUUGuCCGG-------UAG---------CugCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 188267 0.66 0.94653
Target:  5'- --aGCGGCGGGCCGgguagCGgaugcagggcgccGCGCGcCGGAc -3'
miRNA:   3'- agaCGUUGUCCGGUa----GC-------------UGCGC-GUCU- -5'
10946 5' -55.6 NC_002794.1 + 56189 0.66 0.942546
Target:  5'- --aGCAcCGGGCCG-CGGCagGCGUAGGc -3'
miRNA:   3'- agaCGUuGUCCGGUaGCUG--CGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 122480 0.66 0.942546
Target:  5'- --cGCc-CAGGCCgggcugaacgaGUCGGCGcCGCAGGa -3'
miRNA:   3'- agaCGuuGUCCGG-----------UAGCUGC-GCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 113906 0.66 0.942546
Target:  5'- gUCUGCAGgaAGGCCuccagGUCGGC-CGCcGAg -3'
miRNA:   3'- -AGACGUUg-UCCGG-----UAGCUGcGCGuCU- -5'
10946 5' -55.6 NC_002794.1 + 103811 0.66 0.942546
Target:  5'- cCUGCGACGGcggcGCCGaCGugGaguCGCAGGc -3'
miRNA:   3'- aGACGUUGUC----CGGUaGCugC---GCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 157669 0.66 0.942546
Target:  5'- gCUgGCGGCuuGGGCCGcUUGGCGUGCAc- -3'
miRNA:   3'- aGA-CGUUG--UCCGGU-AGCUGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 187480 0.66 0.942546
Target:  5'- --cGCGcCGGGCCGagGAcgaggcCGCGCAGGc -3'
miRNA:   3'- agaCGUuGUCCGGUagCU------GCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 56136 0.66 0.937898
Target:  5'- aCUGCAGCGuGUCGUaCGGCGUGCc-- -3'
miRNA:   3'- aGACGUUGUcCGGUA-GCUGCGCGucu -5'
10946 5' -55.6 NC_002794.1 + 101004 0.66 0.937898
Target:  5'- gCUGCcGCGGGCCuuccuGUCGGgGgaCGCGGGc -3'
miRNA:   3'- aGACGuUGUCCGG-----UAGCUgC--GCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 86980 0.66 0.933016
Target:  5'- gCUGCGACGagguccggcGGCUuUCGGCGgCGUGGGu -3'
miRNA:   3'- aGACGUUGU---------CCGGuAGCUGC-GCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.