miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 5' -55.6 NC_002794.1 + 190347 0.79 0.302538
Target:  5'- aCUGCGuCAGGUCGUCGGcCGCGCGGc -3'
miRNA:   3'- aGACGUuGUCCGGUAGCU-GCGCGUCu -5'
10946 5' -55.6 NC_002794.1 + 91801 0.76 0.429023
Target:  5'- uUCUGCAACGGGCUgagugccugacgGagGACGCGCuGAa -3'
miRNA:   3'- -AGACGUUGUCCGG------------UagCUGCGCGuCU- -5'
10946 5' -55.6 NC_002794.1 + 192950 0.75 0.502871
Target:  5'- gCUGCGcagACAGGCCGaCGAgcCGUGCAGGa -3'
miRNA:   3'- aGACGU---UGUCCGGUaGCU--GCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 184458 0.75 0.522207
Target:  5'- gCUGCcgcccGCGGGCCGcgcgaaCGGCGCGCGGGg -3'
miRNA:   3'- aGACGu----UGUCCGGUa-----GCUGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 102153 0.75 0.522207
Target:  5'- uUCgGCGGCgugcgcgccgGGGCCAUCGugGCGCGc- -3'
miRNA:   3'- -AGaCGUUG----------UCCGGUAGCugCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 114623 0.74 0.541825
Target:  5'- --cGCAGCAGGUCcUCGGCGCGgAGc -3'
miRNA:   3'- agaCGUUGUCCGGuAGCUGCGCgUCu -5'
10946 5' -55.6 NC_002794.1 + 143022 0.74 0.541825
Target:  5'- -gUGCggUcGGCCggGUCGACGUGCAGGg -3'
miRNA:   3'- agACGuuGuCCGG--UAGCUGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 144575 0.74 0.541825
Target:  5'- -gUGUAcCAGGCCAUCGACG-GCGGc -3'
miRNA:   3'- agACGUuGUCCGGUAGCUGCgCGUCu -5'
10946 5' -55.6 NC_002794.1 + 119494 0.74 0.541825
Target:  5'- gCUGCGuccucgGGGUCGUCGGCGgCGCGGAg -3'
miRNA:   3'- aGACGUug----UCCGGUAGCUGC-GCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 182240 0.73 0.591813
Target:  5'- --cGCAGCAGGCCAggaggagCGACaGCGCGc- -3'
miRNA:   3'- agaCGUUGUCCGGUa------GCUG-CGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 71400 0.73 0.601923
Target:  5'- gUCUGCGGCucgggccGGCCGUCGuccaGCGUGGAc -3'
miRNA:   3'- -AGACGUUGu------CCGGUAGCug--CGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 58666 0.73 0.612056
Target:  5'- gCUGCAGCcGGCCGUgcACGCGCAc- -3'
miRNA:   3'- aGACGUUGuCCGGUAgcUGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 36960 0.73 0.622203
Target:  5'- --gGCGGCAGGCaGUCGcgcaggaggaucGCGCGCAGGu -3'
miRNA:   3'- agaCGUUGUCCGgUAGC------------UGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 92760 0.72 0.662789
Target:  5'- aUCUGCGGCGccuucGCCAgcaacUCGGCGCGCAa- -3'
miRNA:   3'- -AGACGUUGUc----CGGU-----AGCUGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 66859 0.72 0.662789
Target:  5'- --cGCGGCgAGGCCG-CGGCGUGCGGc -3'
miRNA:   3'- agaCGUUG-UCCGGUaGCUGCGCGUCu -5'
10946 5' -55.6 NC_002794.1 + 114133 0.72 0.682968
Target:  5'- cUUGCcGCcGGCCAg-GGCGCGCAGGc -3'
miRNA:   3'- aGACGuUGuCCGGUagCUGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 82485 0.72 0.693
Target:  5'- cUCcGCGACGcGGCCcgccgCGACGCGCgAGAc -3'
miRNA:   3'- -AGaCGUUGU-CCGGua---GCUGCGCG-UCU- -5'
10946 5' -55.6 NC_002794.1 + 136337 0.71 0.702982
Target:  5'- cUCgGUGGCGGGCCAgCGugGCGUuGAg -3'
miRNA:   3'- -AGaCGUUGUCCGGUaGCugCGCGuCU- -5'
10946 5' -55.6 NC_002794.1 + 59181 0.71 0.712905
Target:  5'- gCUGCugGACcccguGGCgGUCGACGCGCAc- -3'
miRNA:   3'- aGACG--UUGu----CCGgUAGCUGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 37377 0.71 0.72276
Target:  5'- cUCggGC-GCAGGCCGUCGAaguCGCuGUAGAg -3'
miRNA:   3'- -AGa-CGuUGUCCGGUAGCU---GCG-CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.