miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 5' -55.6 NC_002794.1 + 184727 0.66 0.933016
Target:  5'- --aGCGACAGGCCA---ACGC-CAGGu -3'
miRNA:   3'- agaCGUUGUCCGGUagcUGCGcGUCU- -5'
10946 5' -55.6 NC_002794.1 + 141630 0.66 0.933016
Target:  5'- gUCUaGCGACgggaAGGCCggCGugGcCGCGGc -3'
miRNA:   3'- -AGA-CGUUG----UCCGGuaGCugC-GCGUCu -5'
10946 5' -55.6 NC_002794.1 + 95840 0.66 0.933016
Target:  5'- --gGCGGCGgcGGCCGgggaggCGGCGgGCGGGc -3'
miRNA:   3'- agaCGUUGU--CCGGUa-----GCUGCgCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 86980 0.66 0.933016
Target:  5'- gCUGCGACGagguccggcGGCUuUCGGCGgCGUGGGu -3'
miRNA:   3'- aGACGUUGU---------CCGGuAGCUGC-GCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 135478 0.66 0.933016
Target:  5'- --cGaCGACGccGCCGUCGACGCGCGcGGg -3'
miRNA:   3'- agaC-GUUGUc-CGGUAGCUGCGCGU-CU- -5'
10946 5' -55.6 NC_002794.1 + 113846 0.66 0.930488
Target:  5'- uUCUGCAGCcuggcgugcaguuccGGCCAggcgcgcucggccgCGGCGCGCGu- -3'
miRNA:   3'- -AGACGUUGu--------------CCGGUa-------------GCUGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 148373 0.66 0.9279
Target:  5'- aUCgGCAGCgGGGCCAUCuGGaGCGCGa- -3'
miRNA:   3'- -AGaCGUUG-UCCGGUAG-CUgCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 182317 0.66 0.9279
Target:  5'- --gGCgGACGGGCgGUCGGgCGgGCGGGc -3'
miRNA:   3'- agaCG-UUGUCCGgUAGCU-GCgCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 69741 0.66 0.9279
Target:  5'- --aGCGcCAcGGCCggCGACGcCGCGGGg -3'
miRNA:   3'- agaCGUuGU-CCGGuaGCUGC-GCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 43018 0.66 0.927375
Target:  5'- --aGCuccGCAGGUCGUCGGCcuccaucGCGCGGc -3'
miRNA:   3'- agaCGu--UGUCCGGUAGCUG-------CGCGUCu -5'
10946 5' -55.6 NC_002794.1 + 13709 0.67 0.916961
Target:  5'- gCUaCAACGGGCgcUCGAcCGUGCGGAc -3'
miRNA:   3'- aGAcGUUGUCCGguAGCU-GCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 49347 0.67 0.916961
Target:  5'- cUCgGCGACAGcuugcgaucGCCGUCGAUGUGgaAGAa -3'
miRNA:   3'- -AGaCGUUGUC---------CGGUAGCUGCGCg-UCU- -5'
10946 5' -55.6 NC_002794.1 + 53771 0.67 0.916961
Target:  5'- --gGCGGCGGgacGCCcgCGACGCGCc-- -3'
miRNA:   3'- agaCGUUGUC---CGGuaGCUGCGCGucu -5'
10946 5' -55.6 NC_002794.1 + 192424 0.67 0.911139
Target:  5'- --cGCGACGGGUCcgCGGCcgGCGCGu- -3'
miRNA:   3'- agaCGUUGUCCGGuaGCUG--CGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 111153 0.67 0.911139
Target:  5'- --gGUAGCGGGUCAggcaGACGCGguGc -3'
miRNA:   3'- agaCGUUGUCCGGUag--CUGCGCguCu -5'
10946 5' -55.6 NC_002794.1 + 126131 0.67 0.911139
Target:  5'- gUCUGCGccgguuucugGCcGGCCcucugggacgcgGUCuACGCGCAGAg -3'
miRNA:   3'- -AGACGU----------UGuCCGG------------UAGcUGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 90331 0.67 0.911139
Target:  5'- --cGCAGCugguGGCCGUCGGCcuGUGCGu- -3'
miRNA:   3'- agaCGUUGu---CCGGUAGCUG--CGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 44368 0.67 0.910544
Target:  5'- --cGCGGCGGGCgCGacguccgcgacgcUCGACGCGCc-- -3'
miRNA:   3'- agaCGUUGUCCG-GU-------------AGCUGCGCGucu -5'
10946 5' -55.6 NC_002794.1 + 106329 0.67 0.910544
Target:  5'- --cGCGACGGGUCgacgguucgccggGUCGACG-GCGGGc -3'
miRNA:   3'- agaCGUUGUCCGG-------------UAGCUGCgCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 151041 0.67 0.905085
Target:  5'- gUCUGaUGACGGGCgAgugcaCGGcCGCGCAGGu -3'
miRNA:   3'- -AGAC-GUUGUCCGgUa----GCU-GCGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.