miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10946 5' -55.6 NC_002794.1 + 9033 0.66 0.94653
Target:  5'- gCUGCAACcGGCUggacgagAUCaacgaggcgGugGCGCAGGc -3'
miRNA:   3'- aGACGUUGuCCGG-------UAG---------CugCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 11644 0.7 0.789097
Target:  5'- --aGCGACGGGCgGcCGACGaCGCGGc -3'
miRNA:   3'- agaCGUUGUCCGgUaGCUGC-GCGUCu -5'
10946 5' -55.6 NC_002794.1 + 13709 0.67 0.916961
Target:  5'- gCUaCAACGGGCgcUCGAcCGUGCGGAc -3'
miRNA:   3'- aGAcGUUGUCCGguAGCU-GCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 14533 0.7 0.798087
Target:  5'- cUCgGCcACGGcGCUcucgcccccGUCGACGCGCGGGa -3'
miRNA:   3'- -AGaCGuUGUC-CGG---------UAGCUGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 18058 0.68 0.876461
Target:  5'- aUCUGCuGCAcGCCgccugucugugcguGUCgGugGCGCAGAa -3'
miRNA:   3'- -AGACGuUGUcCGG--------------UAG-CugCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 20373 0.68 0.86403
Target:  5'- cCUGCGcCGGaUCGUCGACGCGguGc -3'
miRNA:   3'- aGACGUuGUCcGGUAGCUGCGCguCu -5'
10946 5' -55.6 NC_002794.1 + 26652 0.67 0.8988
Target:  5'- aCgGCGGCcGGCuCGUCGGCGgGguGGa -3'
miRNA:   3'- aGaCGUUGuCCG-GUAGCUGCgCguCU- -5'
10946 5' -55.6 NC_002794.1 + 29822 0.68 0.878591
Target:  5'- aUCUGUgAGCAGGuCCGggGuCGUGCAGGg -3'
miRNA:   3'- -AGACG-UUGUCC-GGUagCuGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 33220 0.66 0.933016
Target:  5'- -gUGCGGCAGGUC-UCGgacgaguggaACGCGCAc- -3'
miRNA:   3'- agACGUUGUCCGGuAGC----------UGCGCGUcu -5'
10946 5' -55.6 NC_002794.1 + 34241 0.68 0.867009
Target:  5'- gCUGCAcgcgcggcugccgccGCAGGCgGaCcGCGCGCAGGc -3'
miRNA:   3'- aGACGU---------------UGUCCGgUaGcUGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 36872 0.71 0.742232
Target:  5'- aCUGCAGCcGcGCCAgguagCG-CGUGCAGAg -3'
miRNA:   3'- aGACGUUGuC-CGGUa----GCuGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 36960 0.73 0.622203
Target:  5'- --gGCGGCAGGCaGUCGcgcaggaggaucGCGCGCAGGu -3'
miRNA:   3'- agaCGUUGUCCGgUAGC------------UGCGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 37222 0.71 0.73059
Target:  5'- aCUGCGACcggaccucgccgaucAGGUCGUCGACGCucucgcucuccgucgGCGGGc -3'
miRNA:   3'- aGACGUUG---------------UCCGGUAGCUGCG---------------CGUCU- -5'
10946 5' -55.6 NC_002794.1 + 37377 0.71 0.72276
Target:  5'- cUCggGC-GCAGGCCGUCGAaguCGCuGUAGAg -3'
miRNA:   3'- -AGa-CGuUGUCCGGUAGCU---GCG-CGUCU- -5'
10946 5' -55.6 NC_002794.1 + 37734 0.66 0.951147
Target:  5'- --aGCGGCGGcGCCGccggCGGCGgCGCGGc -3'
miRNA:   3'- agaCGUUGUC-CGGUa---GCUGC-GCGUCu -5'
10946 5' -55.6 NC_002794.1 + 43018 0.66 0.927375
Target:  5'- --aGCuccGCAGGUCGUCGGCcuccaucGCGCGGc -3'
miRNA:   3'- agaCGu--UGUCCGGUAGCUG-------CGCGUCu -5'
10946 5' -55.6 NC_002794.1 + 44368 0.67 0.910544
Target:  5'- --cGCGGCGGGCgCGacguccgcgacgcUCGACGCGCc-- -3'
miRNA:   3'- agaCGUUGUCCG-GU-------------AGCUGCGCGucu -5'
10946 5' -55.6 NC_002794.1 + 44551 0.66 0.946961
Target:  5'- gUCgccgGCGGCGGcGcCCGUUGACGUcacGCGGGa -3'
miRNA:   3'- -AGa---CGUUGUC-C-GGUAGCUGCG---CGUCU- -5'
10946 5' -55.6 NC_002794.1 + 46322 0.69 0.832491
Target:  5'- --gGCGACGGcGCCGUCG-C-CGCGGAc -3'
miRNA:   3'- agaCGUUGUC-CGGUAGCuGcGCGUCU- -5'
10946 5' -55.6 NC_002794.1 + 49232 0.7 0.770707
Target:  5'- --cGcCAACAGGgCCGUCGACGgGCGc- -3'
miRNA:   3'- agaC-GUUGUCC-GGUAGCUGCgCGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.