miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 3' -56.4 NC_002794.1 + 125691 0.66 0.932109
Target:  5'- gGCgACGUgUUgCUGCGCGUgacGGugGAGc -3'
miRNA:   3'- gCG-UGCAaAGgGACGCGCA---CCugCUU- -5'
10947 3' -56.4 NC_002794.1 + 123760 0.66 0.926991
Target:  5'- uGC-CGcUUCCC-GgGCGUGGACGc- -3'
miRNA:   3'- gCGuGCaAAGGGaCgCGCACCUGCuu -5'
10947 3' -56.4 NC_002794.1 + 194188 0.66 0.91606
Target:  5'- cCGCACG-UUCaCC-GcCGCGUGGuACGAc -3'
miRNA:   3'- -GCGUGCaAAG-GGaC-GCGCACC-UGCUu -5'
10947 3' -56.4 NC_002794.1 + 141502 0.66 0.91606
Target:  5'- cCGCAgGggUCCCUGUcgcuacgacGCcUGGGCGGg -3'
miRNA:   3'- -GCGUgCaaAGGGACG---------CGcACCUGCUu -5'
10947 3' -56.4 NC_002794.1 + 47090 0.66 0.91606
Target:  5'- aGCACGUUUCCCaGUuCGUccucaaggaGGugGAGu -3'
miRNA:   3'- gCGUGCAAAGGGaCGcGCA---------CCugCUU- -5'
10947 3' -56.4 NC_002794.1 + 112099 0.67 0.904208
Target:  5'- uGCGCG--UCCagGCGCGgccgGGACGAc -3'
miRNA:   3'- gCGUGCaaAGGgaCGCGCa---CCUGCUu -5'
10947 3' -56.4 NC_002794.1 + 63023 0.67 0.884737
Target:  5'- aGCugGUgcUCgCCUGCGCGcaGGAgGAAc -3'
miRNA:   3'- gCGugCAa-AG-GGACGCGCa-CCUgCUU- -5'
10947 3' -56.4 NC_002794.1 + 185556 0.67 0.877808
Target:  5'- cCGCGCGccccgCCCUGcCGCGgcaGGGCGc- -3'
miRNA:   3'- -GCGUGCaaa--GGGAC-GCGCa--CCUGCuu -5'
10947 3' -56.4 NC_002794.1 + 83218 0.67 0.870667
Target:  5'- uGCACGUgaUCCUcGCGCucgcGGACGAGa -3'
miRNA:   3'- gCGUGCAa-AGGGaCGCGca--CCUGCUU- -5'
10947 3' -56.4 NC_002794.1 + 184510 0.68 0.848021
Target:  5'- gGCGCGgg-CCCcgcGCGCGgcgcGGGCGAc -3'
miRNA:   3'- gCGUGCaaaGGGa--CGCGCa---CCUGCUu -5'
10947 3' -56.4 NC_002794.1 + 90921 0.68 0.840084
Target:  5'- cCGCACGgaggaCCacgGCGaCGUGGGCGGg -3'
miRNA:   3'- -GCGUGCaaa--GGga-CGC-GCACCUGCUu -5'
10947 3' -56.4 NC_002794.1 + 92472 0.69 0.813491
Target:  5'- aGCGCGc-UCUCgggccucaaccgGUGCGUGGACGAGg -3'
miRNA:   3'- gCGUGCaaAGGGa-----------CGCGCACCUGCUU- -5'
10947 3' -56.4 NC_002794.1 + 47950 0.69 0.779812
Target:  5'- cCGCGCG--UCCCgGCGCcggcUGGGCGAc -3'
miRNA:   3'- -GCGUGCaaAGGGaCGCGc---ACCUGCUu -5'
10947 3' -56.4 NC_002794.1 + 150072 0.7 0.742371
Target:  5'- aGCGCGcucuggccUUCCUGCGC-UGGGCGGAg -3'
miRNA:   3'- gCGUGCaa------AGGGACGCGcACCUGCUU- -5'
10947 3' -56.4 NC_002794.1 + 22880 0.71 0.713278
Target:  5'- uCGCGCGcUUCCCUG-GCcucccguugGUGGACGGc -3'
miRNA:   3'- -GCGUGCaAAGGGACgCG---------CACCUGCUu -5'
10947 3' -56.4 NC_002794.1 + 153422 0.75 0.476577
Target:  5'- gCGCGCGgagCCgagCUGgGCGUGGACGAu -3'
miRNA:   3'- -GCGUGCaaaGG---GACgCGCACCUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.