Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10947 | 3' | -56.4 | NC_002794.1 | + | 153422 | 0.75 | 0.476577 |
Target: 5'- gCGCGCGgagCCgagCUGgGCGUGGACGAu -3' miRNA: 3'- -GCGUGCaaaGG---GACgCGCACCUGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 22880 | 0.71 | 0.713278 |
Target: 5'- uCGCGCGcUUCCCUG-GCcucccguugGUGGACGGc -3' miRNA: 3'- -GCGUGCaAAGGGACgCG---------CACCUGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 150072 | 0.7 | 0.742371 |
Target: 5'- aGCGCGcucuggccUUCCUGCGC-UGGGCGGAg -3' miRNA: 3'- gCGUGCaa------AGGGACGCGcACCUGCUU- -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 47950 | 0.69 | 0.779812 |
Target: 5'- cCGCGCG--UCCCgGCGCcggcUGGGCGAc -3' miRNA: 3'- -GCGUGCaaAGGGaCGCGc---ACCUGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 92472 | 0.69 | 0.813491 |
Target: 5'- aGCGCGc-UCUCgggccucaaccgGUGCGUGGACGAGg -3' miRNA: 3'- gCGUGCaaAGGGa-----------CGCGCACCUGCUU- -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 90921 | 0.68 | 0.840084 |
Target: 5'- cCGCACGgaggaCCacgGCGaCGUGGGCGGg -3' miRNA: 3'- -GCGUGCaaa--GGga-CGC-GCACCUGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 184510 | 0.68 | 0.848021 |
Target: 5'- gGCGCGgg-CCCcgcGCGCGgcgcGGGCGAc -3' miRNA: 3'- gCGUGCaaaGGGa--CGCGCa---CCUGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 83218 | 0.67 | 0.870667 |
Target: 5'- uGCACGUgaUCCUcGCGCucgcGGACGAGa -3' miRNA: 3'- gCGUGCAa-AGGGaCGCGca--CCUGCUU- -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 185556 | 0.67 | 0.877808 |
Target: 5'- cCGCGCGccccgCCCUGcCGCGgcaGGGCGc- -3' miRNA: 3'- -GCGUGCaaa--GGGAC-GCGCa--CCUGCuu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 63023 | 0.67 | 0.884737 |
Target: 5'- aGCugGUgcUCgCCUGCGCGcaGGAgGAAc -3' miRNA: 3'- gCGugCAa-AG-GGACGCGCa-CCUgCUU- -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 112099 | 0.67 | 0.904208 |
Target: 5'- uGCGCG--UCCagGCGCGgccgGGACGAc -3' miRNA: 3'- gCGUGCaaAGGgaCGCGCa---CCUGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 47090 | 0.66 | 0.91606 |
Target: 5'- aGCACGUUUCCCaGUuCGUccucaaggaGGugGAGu -3' miRNA: 3'- gCGUGCAAAGGGaCGcGCA---------CCugCUU- -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 141502 | 0.66 | 0.91606 |
Target: 5'- cCGCAgGggUCCCUGUcgcuacgacGCcUGGGCGGg -3' miRNA: 3'- -GCGUgCaaAGGGACG---------CGcACCUGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 194188 | 0.66 | 0.91606 |
Target: 5'- cCGCACG-UUCaCC-GcCGCGUGGuACGAc -3' miRNA: 3'- -GCGUGCaAAG-GGaC-GCGCACC-UGCUu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 123760 | 0.66 | 0.926991 |
Target: 5'- uGC-CGcUUCCC-GgGCGUGGACGc- -3' miRNA: 3'- gCGuGCaAAGGGaCgCGCACCUGCuu -5' |
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10947 | 3' | -56.4 | NC_002794.1 | + | 125691 | 0.66 | 0.932109 |
Target: 5'- gGCgACGUgUUgCUGCGCGUgacGGugGAGc -3' miRNA: 3'- gCG-UGCAaAGgGACGCGCA---CCugCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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