miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 34750 0.66 0.612515
Target:  5'- ---gCGCgaCGGCGCGGUGGGacGCGGCa -3'
miRNA:   3'- uaagGCG--GCCGUGCCGCCCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 116945 0.66 0.612515
Target:  5'- -gUCC-CCGGCgGCGGCGucGGcGGGCGc- -3'
miRNA:   3'- uaAGGcGGCCG-UGCCGC--CC-CCCGUug -5'
10947 5' -64 NC_002794.1 + 149696 0.66 0.612515
Target:  5'- --gCCGCgGGgGCcgccuGGCGGGuGGGCcGCc -3'
miRNA:   3'- uaaGGCGgCCgUG-----CCGCCC-CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 125749 0.66 0.612515
Target:  5'- --gCCGCgGG-ACGGCGGccGGCGGCu -3'
miRNA:   3'- uaaGGCGgCCgUGCCGCCccCCGUUG- -5'
10947 5' -64 NC_002794.1 + 192146 0.66 0.602885
Target:  5'- --gCUGCCGGCGCGGuCGcGGcGGaGCcuGCg -3'
miRNA:   3'- uaaGGCGGCCGUGCC-GC-CC-CC-CGu-UG- -5'
10947 5' -64 NC_002794.1 + 110324 0.66 0.602885
Target:  5'- --gCCGCCGcgacGC-CGcGCGGGGGGUc-- -3'
miRNA:   3'- uaaGGCGGC----CGuGC-CGCCCCCCGuug -5'
10947 5' -64 NC_002794.1 + 121986 0.66 0.602885
Target:  5'- --cCCGCCGaGCGCGGCcGGGaGCu-- -3'
miRNA:   3'- uaaGGCGGC-CGUGCCGcCCCcCGuug -5'
10947 5' -64 NC_002794.1 + 145301 0.66 0.597115
Target:  5'- --cCCGCUGucguauuaaaccggcGCGCGGCGGGcGGCGc- -3'
miRNA:   3'- uaaGGCGGC---------------CGUGCCGCCCcCCGUug -5'
10947 5' -64 NC_002794.1 + 110626 0.66 0.593273
Target:  5'- --gCCGCgGcGCcgcgGCGGCGGGGucggguuucuccGGCGGCu -3'
miRNA:   3'- uaaGGCGgC-CG----UGCCGCCCC------------CCGUUG- -5'
10947 5' -64 NC_002794.1 + 95751 0.66 0.593273
Target:  5'- ----gGCUGGUACucGCGGGGcGGCGGCc -3'
miRNA:   3'- uaaggCGGCCGUGc-CGCCCC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 120731 0.66 0.583687
Target:  5'- --gUCGUgGGCACGGCGGuccGGGaGCGc- -3'
miRNA:   3'- uaaGGCGgCCGUGCCGCC---CCC-CGUug -5'
10947 5' -64 NC_002794.1 + 99243 0.66 0.583687
Target:  5'- --aCCGCCGGacccCGCcGCGGaGGGGCu-- -3'
miRNA:   3'- uaaGGCGGCC----GUGcCGCC-CCCCGuug -5'
10947 5' -64 NC_002794.1 + 99569 0.66 0.583687
Target:  5'- -cUCCGCgGGCGagggggGuGCGGaGGGcGCGGCg -3'
miRNA:   3'- uaAGGCGgCCGUg-----C-CGCC-CCC-CGUUG- -5'
10947 5' -64 NC_002794.1 + 167158 0.66 0.583687
Target:  5'- uUUCCGCCGGCGuaugGGUGGcGauGCGACg -3'
miRNA:   3'- uAAGGCGGCCGUg---CCGCC-CccCGUUG- -5'
10947 5' -64 NC_002794.1 + 53759 0.66 0.574132
Target:  5'- --gCCGCCGcuGC-CGGCGGcGGGacgcccGCGACg -3'
miRNA:   3'- uaaGGCGGC--CGuGCCGCC-CCC------CGUUG- -5'
10947 5' -64 NC_002794.1 + 44349 0.66 0.574132
Target:  5'- ---gCGCCGGCgagaccgagagcGCGGCGGGc-GCGACg -3'
miRNA:   3'- uaagGCGGCCG------------UGCCGCCCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 125653 0.66 0.564613
Target:  5'- cGUUCUGCCucGGCGCGcugaaCGGGcucuggcugacGGGCGACg -3'
miRNA:   3'- -UAAGGCGG--CCGUGCc----GCCC-----------CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 115956 0.66 0.564613
Target:  5'- --gUCGCCGGgGaccGUGGGGGGgAGCg -3'
miRNA:   3'- uaaGGCGGCCgUgc-CGCCCCCCgUUG- -5'
10947 5' -64 NC_002794.1 + 92261 0.66 0.564613
Target:  5'- --gUCGCUGGCgGCGGCGccGGGCGAg -3'
miRNA:   3'- uaaGGCGGCCG-UGCCGCccCCCGUUg -5'
10947 5' -64 NC_002794.1 + 50759 0.66 0.564613
Target:  5'- -gUCCGCCccgGGCgGCGGCGacGGcgcgucucGGGCGGCg -3'
miRNA:   3'- uaAGGCGG---CCG-UGCCGC--CC--------CCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.