Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10947 | 5' | -64 | NC_002794.1 | + | 34750 | 0.66 | 0.612515 |
Target: 5'- ---gCGCgaCGGCGCGGUGGGacGCGGCa -3' miRNA: 3'- uaagGCG--GCCGUGCCGCCCccCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 99243 | 0.66 | 0.583687 |
Target: 5'- --aCCGCCGGacccCGCcGCGGaGGGGCu-- -3' miRNA: 3'- uaaGGCGGCC----GUGcCGCC-CCCCGuug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 120731 | 0.66 | 0.583687 |
Target: 5'- --gUCGUgGGCACGGCGGuccGGGaGCGc- -3' miRNA: 3'- uaaGGCGgCCGUGCCGCC---CCC-CGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 53759 | 0.66 | 0.574132 |
Target: 5'- --gCCGCCGcuGC-CGGCGGcGGGacgcccGCGACg -3' miRNA: 3'- uaaGGCGGC--CGuGCCGCC-CCC------CGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 44349 | 0.66 | 0.574132 |
Target: 5'- ---gCGCCGGCgagaccgagagcGCGGCGGGc-GCGACg -3' miRNA: 3'- uaagGCGGCCG------------UGCCGCCCccCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 125653 | 0.66 | 0.564613 |
Target: 5'- cGUUCUGCCucGGCGCGcugaaCGGGcucuggcugacGGGCGACg -3' miRNA: 3'- -UAAGGCGG--CCGUGCc----GCCC-----------CCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 115956 | 0.66 | 0.564613 |
Target: 5'- --gUCGCCGGgGaccGUGGGGGGgAGCg -3' miRNA: 3'- uaaGGCGGCCgUgc-CGCCCCCCgUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 92261 | 0.66 | 0.564613 |
Target: 5'- --gUCGCUGGCgGCGGCGccGGGCGAg -3' miRNA: 3'- uaaGGCGGCCG-UGCCGCccCCCGUUg -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 50759 | 0.66 | 0.564613 |
Target: 5'- -gUCCGCCccgGGCgGCGGCGacGGcgcgucucGGGCGGCg -3' miRNA: 3'- uaAGGCGG---CCG-UGCCGC--CC--------CCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 99569 | 0.66 | 0.583687 |
Target: 5'- -cUCCGCgGGCGagggggGuGCGGaGGGcGCGGCg -3' miRNA: 3'- uaAGGCGgCCGUg-----C-CGCC-CCC-CGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 167158 | 0.66 | 0.583687 |
Target: 5'- uUUCCGCCGGCGuaugGGUGGcGauGCGACg -3' miRNA: 3'- uAAGGCGGCCGUg---CCGCC-CccCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 95751 | 0.66 | 0.593273 |
Target: 5'- ----gGCUGGUACucGCGGGGcGGCGGCc -3' miRNA: 3'- uaaggCGGCCGUGc-CGCCCC-CCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 116945 | 0.66 | 0.612515 |
Target: 5'- -gUCC-CCGGCgGCGGCGucGGcGGGCGc- -3' miRNA: 3'- uaAGGcGGCCG-UGCCGC--CC-CCCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 149696 | 0.66 | 0.612515 |
Target: 5'- --gCCGCgGGgGCcgccuGGCGGGuGGGCcGCc -3' miRNA: 3'- uaaGGCGgCCgUG-----CCGCCC-CCCGuUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 125749 | 0.66 | 0.612515 |
Target: 5'- --gCCGCgGG-ACGGCGGccGGCGGCu -3' miRNA: 3'- uaaGGCGgCCgUGCCGCCccCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 121986 | 0.66 | 0.602885 |
Target: 5'- --cCCGCCGaGCGCGGCcGGGaGCu-- -3' miRNA: 3'- uaaGGCGGC-CGUGCCGcCCCcCGuug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 110324 | 0.66 | 0.602885 |
Target: 5'- --gCCGCCGcgacGC-CGcGCGGGGGGUc-- -3' miRNA: 3'- uaaGGCGGC----CGuGC-CGCCCCCCGuug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 192146 | 0.66 | 0.602885 |
Target: 5'- --gCUGCCGGCGCGGuCGcGGcGGaGCcuGCg -3' miRNA: 3'- uaaGGCGGCCGUGCC-GC-CC-CC-CGu-UG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 145301 | 0.66 | 0.597115 |
Target: 5'- --cCCGCUGucguauuaaaccggcGCGCGGCGGGcGGCGc- -3' miRNA: 3'- uaaGGCGGC---------------CGUGCCGCCCcCCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 110626 | 0.66 | 0.593273 |
Target: 5'- --gCCGCgGcGCcgcgGCGGCGGGGucggguuucuccGGCGGCu -3' miRNA: 3'- uaaGGCGgC-CG----UGCCGCCCC------------CCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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