Results 21 - 40 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10947 | 5' | -64 | NC_002794.1 | + | 143741 | 0.72 | 0.276282 |
Target: 5'- --cCCGCCGGaCGCGccgcCGGGGGGCuccGCu -3' miRNA: 3'- uaaGGCGGCC-GUGCc---GCCCCCCGu--UG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 71300 | 0.72 | 0.28878 |
Target: 5'- --gCCGCCGGCGCGcuCGGGcGGCGAg -3' miRNA: 3'- uaaGGCGGCCGUGCc-GCCCcCCGUUg -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 101578 | 0.72 | 0.28878 |
Target: 5'- ---gUGCCGGCcgccGCGGCcgGGGGGGCGGg -3' miRNA: 3'- uaagGCGGCCG----UGCCG--CCCCCCGUUg -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 107074 | 0.72 | 0.281852 |
Target: 5'- --gCCGCCGGCAUgucggagccgacgGGCGGGGGuGUg-- -3' miRNA: 3'- uaaGGCGGCCGUG-------------CCGCCCCC-CGuug -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 101276 | 0.71 | 0.301718 |
Target: 5'- ---gCGCCGGUggcgGCGGCGGGGaGGaGACg -3' miRNA: 3'- uaagGCGGCCG----UGCCGCCCC-CCgUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 100819 | 0.71 | 0.308353 |
Target: 5'- ---gUGCCGG-GCGGCGGGGgccGGCAGCc -3' miRNA: 3'- uaagGCGGCCgUGCCGCCCC---CCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 3746 | 0.71 | 0.308353 |
Target: 5'- --aCCGCaacgcgcgucaCGGCGgGGCGGGGGaGUGACu -3' miRNA: 3'- uaaGGCG-----------GCCGUgCCGCCCCC-CGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 44298 | 0.71 | 0.328922 |
Target: 5'- --gCCggGCCGGCGaGGCGGGGaGCGACc -3' miRNA: 3'- uaaGG--CGGCCGUgCCGCCCCcCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 146993 | 0.71 | 0.315098 |
Target: 5'- --gCCGCCGGCcgacguCGGCGGcGGcGGCcGCc -3' miRNA: 3'- uaaGGCGGCCGu-----GCCGCC-CC-CCGuUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 2084 | 0.71 | 0.301718 |
Target: 5'- --aCCGCCGGCcuuauACGGCGaccGGGGCGu- -3' miRNA: 3'- uaaGGCGGCCG-----UGCCGCc--CCCCGUug -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 20961 | 0.71 | 0.311038 |
Target: 5'- -aUCCGCUGGCaacagcucaccggcaGCGGCGGc-GGCAGCg -3' miRNA: 3'- uaAGGCGGCCG---------------UGCCGCCccCCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 37743 | 0.71 | 0.308353 |
Target: 5'- --gCCGCCGGCgGCGGCGcGGcGGCGccgGCg -3' miRNA: 3'- uaaGGCGGCCG-UGCCGC-CCcCCGU---UG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 179679 | 0.71 | 0.315098 |
Target: 5'- --cCCGCggCGGCgACGGUGGcGGcGGCGACg -3' miRNA: 3'- uaaGGCG--GCCG-UGCCGCC-CC-CCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 188249 | 0.71 | 0.308353 |
Target: 5'- --aCCGgCGGCggcggcgguaGCGGCGGGccGGGUAGCg -3' miRNA: 3'- uaaGGCgGCCG----------UGCCGCCC--CCCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 186274 | 0.71 | 0.328922 |
Target: 5'- --aCCGCCuGGCGCGGCGGcaccgcGGccaGGCGGCc -3' miRNA: 3'- uaaGGCGG-CCGUGCCGCC------CC---CCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 37265 | 0.71 | 0.336 |
Target: 5'- -cUCCGUCGGCG-GGCGcGcGGGcGCGGCg -3' miRNA: 3'- uaAGGCGGCCGUgCCGC-C-CCC-CGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 69747 | 0.7 | 0.343189 |
Target: 5'- --aCgGCCGGCgACGccGCGGGGauGGCGACg -3' miRNA: 3'- uaaGgCGGCCG-UGC--CGCCCC--CCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 18691 | 0.7 | 0.343189 |
Target: 5'- --gCCGucuCCGGCACGGCGGcGGcGGUccgGACg -3' miRNA: 3'- uaaGGC---GGCCGUGCCGCC-CC-CCG---UUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 121483 | 0.7 | 0.343189 |
Target: 5'- --aCCGCCGGUucggacGCGGCcuccgccGGGGCGACg -3' miRNA: 3'- uaaGGCGGCCG------UGCCGcc-----CCCCGUUG- -5' |
|||||||
10947 | 5' | -64 | NC_002794.1 | + | 189316 | 0.7 | 0.350488 |
Target: 5'- aGUUCgGgCaGCugGuCGGGGGGCAGCa -3' miRNA: 3'- -UAAGgCgGcCGugCcGCCCCCCGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home