miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 94027 0.85 0.03778
Target:  5'- gGUUCCGCCGGCgggcccgagagcgGCGGCGgugcGGGGGCGGCg -3'
miRNA:   3'- -UAAGGCGGCCG-------------UGCCGC----CCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 108463 0.79 0.089918
Target:  5'- --cCCGCCGGCACGGgcCGaGGGGCGACc -3'
miRNA:   3'- uaaGGCGGCCGUGCC--GCcCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 94274 0.79 0.099356
Target:  5'- -aUuuGCgCGGCGCGGCccgagcGGGGGGCGGCu -3'
miRNA:   3'- uaAggCG-GCCGUGCCG------CCCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 185169 0.77 0.130342
Target:  5'- -cUCCGCCGGCGCGGCGcGGucGGCGc- -3'
miRNA:   3'- uaAGGCGGCCGUGCCGC-CCc-CCGUug -5'
10947 5' -64 NC_002794.1 + 107219 0.77 0.136861
Target:  5'- --gCCGCCGG-GCGGCGcgcgacGGGGGCGGCg -3'
miRNA:   3'- uaaGGCGGCCgUGCCGC------CCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 149276 0.76 0.147201
Target:  5'- --cCCGCCGGCggcGCGGCggcucgcucacGGGGGGCGGg -3'
miRNA:   3'- uaaGGCGGCCG---UGCCG-----------CCCCCCGUUg -5'
10947 5' -64 NC_002794.1 + 106982 0.76 0.150804
Target:  5'- --gCgGCCGGCACGGCGGuGGcGGCGc- -3'
miRNA:   3'- uaaGgCGGCCGUGCCGCC-CC-CCGUug -5'
10947 5' -64 NC_002794.1 + 101240 0.76 0.154486
Target:  5'- cGUUUCGCucCGGCGCGcaGCGGGGGGCcGCc -3'
miRNA:   3'- -UAAGGCG--GCCGUGC--CGCCCCCCGuUG- -5'
10947 5' -64 NC_002794.1 + 112345 0.75 0.174143
Target:  5'- --gCCGgCGGCGcCGGCGGcGGGGCGGg -3'
miRNA:   3'- uaaGGCgGCCGU-GCCGCC-CCCCGUUg -5'
10947 5' -64 NC_002794.1 + 58055 0.75 0.178332
Target:  5'- --cCCGUCGGCggccccggcgGCGGCGGGacGGGCGGCc -3'
miRNA:   3'- uaaGGCGGCCG----------UGCCGCCC--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 107530 0.75 0.186981
Target:  5'- --aCgGCCGGCGCGGCGccGGcGGCGACg -3'
miRNA:   3'- uaaGgCGGCCGUGCCGCc-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 116126 0.74 0.205392
Target:  5'- -gUCCGCCGcgGCGGCGGcGGcGGCGGCc -3'
miRNA:   3'- uaAGGCGGCcgUGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 142139 0.74 0.205392
Target:  5'- --aCCGCCGGguCACGGCGGaGGcGGCggUa -3'
miRNA:   3'- uaaGGCGGCC--GUGCCGCC-CC-CCGuuG- -5'
10947 5' -64 NC_002794.1 + 49400 0.74 0.220212
Target:  5'- --gCCGUCGGcCACGGCGGccgcGGcGGCGGCg -3'
miRNA:   3'- uaaGGCGGCC-GUGCCGCC----CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 32868 0.73 0.225351
Target:  5'- ----aGCCGGCggGCGGCGGcGGcGGCGGCg -3'
miRNA:   3'- uaaggCGGCCG--UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 34714 0.73 0.225351
Target:  5'- --cCCGCCGGCGCcacgaGGCGcGGGcGGCcGCa -3'
miRNA:   3'- uaaGGCGGCCGUG-----CCGC-CCC-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 106344 0.73 0.235934
Target:  5'- -gUUCGCCGGgucgACGGCGGGcGGGCGc- -3'
miRNA:   3'- uaAGGCGGCCg---UGCCGCCC-CCCGUug -5'
10947 5' -64 NC_002794.1 + 66851 0.73 0.252588
Target:  5'- --gCCGUCGGCGCGGCGaGGccGCGGCg -3'
miRNA:   3'- uaaGGCGGCCGUGCCGC-CCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 94001 0.73 0.252588
Target:  5'- ---aCGCCGGCGcCGGCGGcGGGcCGGCg -3'
miRNA:   3'- uaagGCGGCCGU-GCCGCCcCCC-GUUG- -5'
10947 5' -64 NC_002794.1 + 37867 0.72 0.275668
Target:  5'- -cUCCgGUCGGCgucucggGCGGCGGGGgcgguGGCGGCg -3'
miRNA:   3'- uaAGG-CGGCCG-------UGCCGCCCC-----CCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.