miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 143741 0.72 0.276282
Target:  5'- --cCCGCCGGaCGCGccgcCGGGGGGCuccGCu -3'
miRNA:   3'- uaaGGCGGCC-GUGCc---GCCCCCCGu--UG- -5'
10947 5' -64 NC_002794.1 + 107074 0.72 0.281852
Target:  5'- --gCCGCCGGCAUgucggagccgacgGGCGGGGGuGUg-- -3'
miRNA:   3'- uaaGGCGGCCGUG-------------CCGCCCCC-CGuug -5'
10947 5' -64 NC_002794.1 + 71300 0.72 0.28878
Target:  5'- --gCCGCCGGCGCGcuCGGGcGGCGAg -3'
miRNA:   3'- uaaGGCGGCCGUGCc-GCCCcCCGUUg -5'
10947 5' -64 NC_002794.1 + 101578 0.72 0.28878
Target:  5'- ---gUGCCGGCcgccGCGGCcgGGGGGGCGGg -3'
miRNA:   3'- uaagGCGGCCG----UGCCG--CCCCCCGUUg -5'
10947 5' -64 NC_002794.1 + 2084 0.71 0.301718
Target:  5'- --aCCGCCGGCcuuauACGGCGaccGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCGCc--CCCCGUug -5'
10947 5' -64 NC_002794.1 + 101276 0.71 0.301718
Target:  5'- ---gCGCCGGUggcgGCGGCGGGGaGGaGACg -3'
miRNA:   3'- uaagGCGGCCG----UGCCGCCCC-CCgUUG- -5'
10947 5' -64 NC_002794.1 + 100819 0.71 0.308353
Target:  5'- ---gUGCCGG-GCGGCGGGGgccGGCAGCc -3'
miRNA:   3'- uaagGCGGCCgUGCCGCCCC---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 37743 0.71 0.308353
Target:  5'- --gCCGCCGGCgGCGGCGcGGcGGCGccgGCg -3'
miRNA:   3'- uaaGGCGGCCG-UGCCGC-CCcCCGU---UG- -5'
10947 5' -64 NC_002794.1 + 3746 0.71 0.308353
Target:  5'- --aCCGCaacgcgcgucaCGGCGgGGCGGGGGaGUGACu -3'
miRNA:   3'- uaaGGCG-----------GCCGUgCCGCCCCC-CGUUG- -5'
10947 5' -64 NC_002794.1 + 188249 0.71 0.308353
Target:  5'- --aCCGgCGGCggcggcgguaGCGGCGGGccGGGUAGCg -3'
miRNA:   3'- uaaGGCgGCCG----------UGCCGCCC--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 20961 0.71 0.311038
Target:  5'- -aUCCGCUGGCaacagcucaccggcaGCGGCGGc-GGCAGCg -3'
miRNA:   3'- uaAGGCGGCCG---------------UGCCGCCccCCGUUG- -5'
10947 5' -64 NC_002794.1 + 146993 0.71 0.315098
Target:  5'- --gCCGCCGGCcgacguCGGCGGcGGcGGCcGCc -3'
miRNA:   3'- uaaGGCGGCCGu-----GCCGCC-CC-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 179679 0.71 0.315098
Target:  5'- --cCCGCggCGGCgACGGUGGcGGcGGCGACg -3'
miRNA:   3'- uaaGGCG--GCCG-UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 186274 0.71 0.328922
Target:  5'- --aCCGCCuGGCGCGGCGGcaccgcGGccaGGCGGCc -3'
miRNA:   3'- uaaGGCGG-CCGUGCCGCC------CC---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 44298 0.71 0.328922
Target:  5'- --gCCggGCCGGCGaGGCGGGGaGCGACc -3'
miRNA:   3'- uaaGG--CGGCCGUgCCGCCCCcCGUUG- -5'
10947 5' -64 NC_002794.1 + 37265 0.71 0.336
Target:  5'- -cUCCGUCGGCG-GGCGcGcGGGcGCGGCg -3'
miRNA:   3'- uaAGGCGGCCGUgCCGC-C-CCC-CGUUG- -5'
10947 5' -64 NC_002794.1 + 121483 0.7 0.343189
Target:  5'- --aCCGCCGGUucggacGCGGCcuccgccGGGGCGACg -3'
miRNA:   3'- uaaGGCGGCCG------UGCCGcc-----CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 69747 0.7 0.343189
Target:  5'- --aCgGCCGGCgACGccGCGGGGauGGCGACg -3'
miRNA:   3'- uaaGgCGGCCG-UGC--CGCCCC--CCGUUG- -5'
10947 5' -64 NC_002794.1 + 18691 0.7 0.343189
Target:  5'- --gCCGucuCCGGCACGGCGGcGGcGGUccgGACg -3'
miRNA:   3'- uaaGGC---GGCCGUGCCGCC-CC-CCG---UUG- -5'
10947 5' -64 NC_002794.1 + 191871 0.7 0.343189
Target:  5'- ----gGCCGGCgGCGGa-GGGGGCGGCg -3'
miRNA:   3'- uaaggCGGCCG-UGCCgcCCCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.