miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 102639 0.7 0.349753
Target:  5'- -aUCCGCCGGCugGCGGCGcgcucggaGGagcugccgagcguGGGCGACc -3'
miRNA:   3'- uaAGGCGGCCG--UGCCGC--------CC-------------CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 129924 0.7 0.349753
Target:  5'- -aUUCGCCaGGCcguggcgACGGCGGcGGcGGCGGCu -3'
miRNA:   3'- uaAGGCGG-CCG-------UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 189316 0.7 0.350488
Target:  5'- aGUUCgGgCaGCugGuCGGGGGGCAGCa -3'
miRNA:   3'- -UAAGgCgGcCGugCcGCCCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 120065 0.7 0.357896
Target:  5'- --gCCGCggaGGCcgacGCGGCGGuGGcGGCGACg -3'
miRNA:   3'- uaaGGCGg--CCG----UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 26655 0.7 0.365414
Target:  5'- --gCgGCCGGCucguCGGCGGGGuGG-AGCg -3'
miRNA:   3'- uaaGgCGGCCGu---GCCGCCCC-CCgUUG- -5'
10947 5' -64 NC_002794.1 + 68448 0.7 0.373039
Target:  5'- gGUUCCGCCuGGCccguuucuucACGGCGcaguGGGGCAc- -3'
miRNA:   3'- -UAAGGCGG-CCG----------UGCCGCc---CCCCGUug -5'
10947 5' -64 NC_002794.1 + 66725 0.7 0.380773
Target:  5'- --gCCGCCGccaccGC-CGGCGGuGGcGGCGGCg -3'
miRNA:   3'- uaaGGCGGC-----CGuGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 115036 0.7 0.388612
Target:  5'- -gUCUGCaGGUgcgaccggGCGGCGGGcGGCAGCg -3'
miRNA:   3'- uaAGGCGgCCG--------UGCCGCCCcCCGUUG- -5'
10947 5' -64 NC_002794.1 + 180745 0.7 0.388612
Target:  5'- --gCCGuCCGGCuccuCGGCGGcuucGGcGGCAACu -3'
miRNA:   3'- uaaGGC-GGCCGu---GCCGCC----CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 95838 0.69 0.396557
Target:  5'- ---gCGgCGGCgGCGGcCGGGGaGGCGGCg -3'
miRNA:   3'- uaagGCgGCCG-UGCC-GCCCC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 142321 0.69 0.396557
Target:  5'- ---gCGgCGGCGCaGGCGGcGGaGGCGGCg -3'
miRNA:   3'- uaagGCgGCCGUG-CCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 87359 0.69 0.404606
Target:  5'- -gUCCGgCGGCgaGCGGCGuucuGGGCGGCg -3'
miRNA:   3'- uaAGGCgGCCG--UGCCGCcc--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 1959 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 1896 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 1561 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 55303 0.69 0.412756
Target:  5'- ---gCGgCGGCgucGCGGCGGGcgcGGGCGGCu -3'
miRNA:   3'- uaagGCgGCCG---UGCCGCCC---CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 2021 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 100314 0.69 0.421008
Target:  5'- --gCCGCUGGCACGcGCGGccGGCGcACg -3'
miRNA:   3'- uaaGGCGGCCGUGC-CGCCccCCGU-UG- -5'
10947 5' -64 NC_002794.1 + 119438 0.69 0.421008
Target:  5'- -gUCCGaCGGCgGCGGCGGuGGcGGCGu- -3'
miRNA:   3'- uaAGGCgGCCG-UGCCGCC-CC-CCGUug -5'
10947 5' -64 NC_002794.1 + 110464 0.69 0.429358
Target:  5'- ----aGCCGGCucguCGGCucGGGGGGUAGa -3'
miRNA:   3'- uaaggCGGCCGu---GCCG--CCCCCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.