miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 12217 0.67 0.555137
Target:  5'- --gCCGgCGGCGuCGGCGGcgccGGCGGCg -3'
miRNA:   3'- uaaGGCgGCCGU-GCCGCCcc--CCGUUG- -5'
10947 5' -64 NC_002794.1 + 132626 0.67 0.555137
Target:  5'- uGUUCUGuuGGCgaaACGacacucuCGGGGGGCAGa -3'
miRNA:   3'- -UAAGGCggCCG---UGCc------GCCCCCCGUUg -5'
10947 5' -64 NC_002794.1 + 91599 0.67 0.545707
Target:  5'- --gCCGCUGGUGCGcGCGGccgaGGGCcACg -3'
miRNA:   3'- uaaGGCGGCCGUGC-CGCCc---CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 30983 0.67 0.545707
Target:  5'- -cUCC-CCGGCgACGGCGGGGucuucGCcgGACg -3'
miRNA:   3'- uaAGGcGGCCG-UGCCGCCCCc----CG--UUG- -5'
10947 5' -64 NC_002794.1 + 154361 0.67 0.545707
Target:  5'- --cCCGCgCGGUccaggccgcgGCGGCGGcGGGCAc- -3'
miRNA:   3'- uaaGGCG-GCCG----------UGCCGCCcCCCGUug -5'
10947 5' -64 NC_002794.1 + 184572 0.67 0.545707
Target:  5'- ---gCGCCGcCGCGGCGGcGGcGGCcACg -3'
miRNA:   3'- uaagGCGGCcGUGCCGCC-CC-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 129330 0.67 0.545707
Target:  5'- ---aCGcCCGGgGCGGCGGuuuccagaacGGGGUGACu -3'
miRNA:   3'- uaagGC-GGCCgUGCCGCC----------CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 82953 0.67 0.544767
Target:  5'- --cCCGCCGcGCACGGCGcgcacgcgacgcaGGucGCGACg -3'
miRNA:   3'- uaaGGCGGC-CGUGCCGC-------------CCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 116082 0.67 0.53633
Target:  5'- ---gCGCuCGGCGCGGCGGucgucgccGGGGuCGAg -3'
miRNA:   3'- uaagGCG-GCCGUGCCGCC--------CCCC-GUUg -5'
10947 5' -64 NC_002794.1 + 188359 0.67 0.53633
Target:  5'- --cCCGuCCGGCcgGCGGCGGccgaGGGCGu- -3'
miRNA:   3'- uaaGGC-GGCCG--UGCCGCCc---CCCGUug -5'
10947 5' -64 NC_002794.1 + 192614 0.67 0.53633
Target:  5'- -cUCCGCCaGGUGCGGacaGucGGGCGGCc -3'
miRNA:   3'- uaAGGCGG-CCGUGCCg--CccCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 22591 0.67 0.53073
Target:  5'- -gUCgCGCuCGGCACGGuCGGGacgcucgagccgaucGGGCcGCu -3'
miRNA:   3'- uaAG-GCG-GCCGUGCC-GCCC---------------CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 70216 0.67 0.527009
Target:  5'- --cUCGcCCGG-ACGGuCGGGcGGGCGGCc -3'
miRNA:   3'- uaaGGC-GGCCgUGCC-GCCC-CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 16154 0.67 0.527009
Target:  5'- cUUCUcggaGCCGGCaugaACGGCGGGuGGcCGACc -3'
miRNA:   3'- uAAGG----CGGCCG----UGCCGCCCcCC-GUUG- -5'
10947 5' -64 NC_002794.1 + 131180 0.67 0.51775
Target:  5'- -cUCgaGCCGgagacaGCACGGCGccGGGGCGGCg -3'
miRNA:   3'- uaAGg-CGGC------CGUGCCGCc-CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 77982 0.67 0.51775
Target:  5'- -cUCCGCCucGGaACGGCGGGcguuguuccGGCGGCg -3'
miRNA:   3'- uaAGGCGG--CCgUGCCGCCCc--------CCGUUG- -5'
10947 5' -64 NC_002794.1 + 34070 0.67 0.508556
Target:  5'- --cCCGCCGuucccGC-CGGCGGccGGGCAGCc -3'
miRNA:   3'- uaaGGCGGC-----CGuGCCGCCc-CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 107876 0.67 0.508556
Target:  5'- --aUCGCggaggCGGCGCGGCGGGuGcGGCuGCc -3'
miRNA:   3'- uaaGGCG-----GCCGUGCCGCCC-C-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 49598 0.67 0.508556
Target:  5'- -aUCgCGaUCGGCgACGGCGGGcgccGGCGGCg -3'
miRNA:   3'- uaAG-GC-GGCCG-UGCCGCCCc---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 32627 0.67 0.508556
Target:  5'- --cCCGCCGaCGaaGaGGGGGGCGACg -3'
miRNA:   3'- uaaGGCGGCcGUgcCgCCCCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.