miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 107876 0.67 0.508556
Target:  5'- --aUCGCggaggCGGCGCGGCGGGuGcGGCuGCc -3'
miRNA:   3'- uaaGGCG-----GCCGUGCCGCCC-C-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 34070 0.67 0.508556
Target:  5'- --cCCGCCGuucccGC-CGGCGGccGGGCAGCc -3'
miRNA:   3'- uaaGGCGGC-----CGuGCCGCCc-CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 104429 0.67 0.508556
Target:  5'- --gCCGCCGGCcCGgacgccgccGCGGGcggcccgagcccGGGCGGCg -3'
miRNA:   3'- uaaGGCGGCCGuGC---------CGCCC------------CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 53248 0.67 0.500341
Target:  5'- --cCCGCCGcGC-CGGCGucgccgcgcgacaacGGGGCGGCg -3'
miRNA:   3'- uaaGGCGGC-CGuGCCGCc--------------CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 141389 0.68 0.48768
Target:  5'- -gUCCGUCguucggggGGCuCGGCGacgacgaugaccucGGGGGCGGCg -3'
miRNA:   3'- uaAGGCGG--------CCGuGCCGC--------------CCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 89727 0.68 0.480513
Target:  5'- -aUCCGCgCGGCGuCGGUccuuGGGGauucgcggcgauuGGCAGCu -3'
miRNA:   3'- uaAGGCG-GCCGU-GCCG----CCCC-------------CCGUUG- -5'
10947 5' -64 NC_002794.1 + 153004 0.68 0.472513
Target:  5'- -aUCU-CCaGCACGGCGGacuGGGCGACg -3'
miRNA:   3'- uaAGGcGGcCGUGCCGCCc--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 65924 0.68 0.463703
Target:  5'- --gUCGCCGGCgGCGGUGGcgucGGCGGCg -3'
miRNA:   3'- uaaGGCGGCCG-UGCCGCCcc--CCGUUG- -5'
10947 5' -64 NC_002794.1 + 137605 0.68 0.463703
Target:  5'- --gCCGCCGGCggucGCGGCGGcGGuGCccacGACg -3'
miRNA:   3'- uaaGGCGGCCG----UGCCGCCcCC-CG----UUG- -5'
10947 5' -64 NC_002794.1 + 138592 0.68 0.463703
Target:  5'- ---gCGUCGGCGCGGCGGaGaGCGGCu -3'
miRNA:   3'- uaagGCGGCCGUGCCGCCcCcCGUUG- -5'
10947 5' -64 NC_002794.1 + 61514 0.68 0.463703
Target:  5'- --cCCGCCGG-ACGGCGGccgccGGCGGCc -3'
miRNA:   3'- uaaGGCGGCCgUGCCGCCcc---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 87036 0.68 0.463703
Target:  5'- -aUCCGgggaCCGGCGCGGCucGGGGCc-- -3'
miRNA:   3'- uaAGGC----GGCCGUGCCGccCCCCGuug -5'
10947 5' -64 NC_002794.1 + 19452 0.68 0.446347
Target:  5'- ----aGCgGGCACGaGCGGcGGcGGCGGCg -3'
miRNA:   3'- uaaggCGgCCGUGC-CGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 118248 0.68 0.446347
Target:  5'- -gUCgGCgGGCuggagguCGGcCGGGGcGGCGGCg -3'
miRNA:   3'- uaAGgCGgCCGu------GCC-GCCCC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 101631 0.68 0.446347
Target:  5'- cGUUUCGUCcGCGagcgugGGCGGGcGGGCGGCg -3'
miRNA:   3'- -UAAGGCGGcCGUg-----CCGCCC-CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 111083 0.68 0.446347
Target:  5'- --cCCGUCGGCAggguCGGCGGGcccGGCGGg -3'
miRNA:   3'- uaaGGCGGCCGU----GCCGCCCc--CCGUUg -5'
10947 5' -64 NC_002794.1 + 94147 0.69 0.437805
Target:  5'- --aCCGCggCGGCgcuggACGGUGGGGGG-GACg -3'
miRNA:   3'- uaaGGCG--GCCG-----UGCCGCCCCCCgUUG- -5'
10947 5' -64 NC_002794.1 + 115822 0.69 0.437805
Target:  5'- cUUCCGCCuggaucggcggGGCcCGGCGGGcucGGGCcuggGACg -3'
miRNA:   3'- uAAGGCGG-----------CCGuGCCGCCC---CCCG----UUG- -5'
10947 5' -64 NC_002794.1 + 55270 0.69 0.437805
Target:  5'- ----aGCCGGgggGCGGCGGuGGcGGCGACg -3'
miRNA:   3'- uaaggCGGCCg--UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 110464 0.69 0.429358
Target:  5'- ----aGCCGGCucguCGGCucGGGGGGUAGa -3'
miRNA:   3'- uaaggCGGCCGu---GCCG--CCCCCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.