Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10947 | 5' | -64 | NC_002794.1 | + | 100314 | 0.69 | 0.421008 |
Target: 5'- --gCCGCUGGCACGcGCGGccGGCGcACg -3' miRNA: 3'- uaaGGCGGCCGUGC-CGCCccCCGU-UG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 119438 | 0.69 | 0.421008 |
Target: 5'- -gUCCGaCGGCgGCGGCGGuGGcGGCGu- -3' miRNA: 3'- uaAGGCgGCCG-UGCCGCC-CC-CCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 2021 | 0.69 | 0.412756 |
Target: 5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3' miRNA: 3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 55303 | 0.69 | 0.412756 |
Target: 5'- ---gCGgCGGCgucGCGGCGGGcgcGGGCGGCu -3' miRNA: 3'- uaagGCgGCCG---UGCCGCCC---CCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 1561 | 0.69 | 0.412756 |
Target: 5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3' miRNA: 3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 1959 | 0.69 | 0.412756 |
Target: 5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3' miRNA: 3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 1896 | 0.69 | 0.412756 |
Target: 5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3' miRNA: 3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 87359 | 0.69 | 0.404606 |
Target: 5'- -gUCCGgCGGCgaGCGGCGuucuGGGCGGCg -3' miRNA: 3'- uaAGGCgGCCG--UGCCGCcc--CCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 142321 | 0.69 | 0.396557 |
Target: 5'- ---gCGgCGGCGCaGGCGGcGGaGGCGGCg -3' miRNA: 3'- uaagGCgGCCGUG-CCGCC-CC-CCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 95838 | 0.69 | 0.396557 |
Target: 5'- ---gCGgCGGCgGCGGcCGGGGaGGCGGCg -3' miRNA: 3'- uaagGCgGCCG-UGCC-GCCCC-CCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 115036 | 0.7 | 0.388612 |
Target: 5'- -gUCUGCaGGUgcgaccggGCGGCGGGcGGCAGCg -3' miRNA: 3'- uaAGGCGgCCG--------UGCCGCCCcCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 180745 | 0.7 | 0.388612 |
Target: 5'- --gCCGuCCGGCuccuCGGCGGcuucGGcGGCAACu -3' miRNA: 3'- uaaGGC-GGCCGu---GCCGCC----CC-CCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 66725 | 0.7 | 0.380773 |
Target: 5'- --gCCGCCGccaccGC-CGGCGGuGGcGGCGGCg -3' miRNA: 3'- uaaGGCGGC-----CGuGCCGCC-CC-CCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 68448 | 0.7 | 0.373039 |
Target: 5'- gGUUCCGCCuGGCccguuucuucACGGCGcaguGGGGCAc- -3' miRNA: 3'- -UAAGGCGG-CCG----------UGCCGCc---CCCCGUug -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 26655 | 0.7 | 0.365414 |
Target: 5'- --gCgGCCGGCucguCGGCGGGGuGG-AGCg -3' miRNA: 3'- uaaGgCGGCCGu---GCCGCCCC-CCgUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 120065 | 0.7 | 0.357896 |
Target: 5'- --gCCGCggaGGCcgacGCGGCGGuGGcGGCGACg -3' miRNA: 3'- uaaGGCGg--CCG----UGCCGCC-CC-CCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 189316 | 0.7 | 0.350488 |
Target: 5'- aGUUCgGgCaGCugGuCGGGGGGCAGCa -3' miRNA: 3'- -UAAGgCgGcCGugCcGCCCCCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 129924 | 0.7 | 0.349753 |
Target: 5'- -aUUCGCCaGGCcguggcgACGGCGGcGGcGGCGGCu -3' miRNA: 3'- uaAGGCGG-CCG-------UGCCGCC-CC-CCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 102639 | 0.7 | 0.349753 |
Target: 5'- -aUCCGCCGGCugGCGGCGcgcucggaGGagcugccgagcguGGGCGACc -3' miRNA: 3'- uaAGGCGGCCG--UGCCGC--------CC-------------CCCGUUG- -5' |
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10947 | 5' | -64 | NC_002794.1 | + | 69747 | 0.7 | 0.343189 |
Target: 5'- --aCgGCCGGCgACGccGCGGGGauGGCGACg -3' miRNA: 3'- uaaGgCGGCCG-UGC--CGCCCC--CCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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