miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 1561 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 1896 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 1959 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 2021 0.69 0.412756
Target:  5'- --cCCGCCGGCcuuauACGGgGuccGGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCgC---CCCCCGUug -5'
10947 5' -64 NC_002794.1 + 2084 0.71 0.301718
Target:  5'- --aCCGCCGGCcuuauACGGCGaccGGGGCGu- -3'
miRNA:   3'- uaaGGCGGCCG-----UGCCGCc--CCCCGUug -5'
10947 5' -64 NC_002794.1 + 3746 0.71 0.308353
Target:  5'- --aCCGCaacgcgcgucaCGGCGgGGCGGGGGaGUGACu -3'
miRNA:   3'- uaaGGCG-----------GCCGUgCCGCCCCC-CGUUG- -5'
10947 5' -64 NC_002794.1 + 5804 0.67 0.508556
Target:  5'- --aCCGUCGGUGagacccCGGUGGGGGGgGGg -3'
miRNA:   3'- uaaGGCGGCCGU------GCCGCCCCCCgUUg -5'
10947 5' -64 NC_002794.1 + 12217 0.67 0.555137
Target:  5'- --gCCGgCGGCGuCGGCGGcgccGGCGGCg -3'
miRNA:   3'- uaaGGCgGCCGU-GCCGCCcc--CCGUUG- -5'
10947 5' -64 NC_002794.1 + 16154 0.67 0.527009
Target:  5'- cUUCUcggaGCCGGCaugaACGGCGGGuGGcCGACc -3'
miRNA:   3'- uAAGG----CGGCCG----UGCCGCCCcCC-GUUG- -5'
10947 5' -64 NC_002794.1 + 18691 0.7 0.343189
Target:  5'- --gCCGucuCCGGCACGGCGGcGGcGGUccgGACg -3'
miRNA:   3'- uaaGGC---GGCCGUGCCGCC-CC-CCG---UUG- -5'
10947 5' -64 NC_002794.1 + 19452 0.68 0.446347
Target:  5'- ----aGCgGGCACGaGCGGcGGcGGCGGCg -3'
miRNA:   3'- uaaggCGgCCGUGC-CGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 20961 0.71 0.311038
Target:  5'- -aUCCGCUGGCaacagcucaccggcaGCGGCGGc-GGCAGCg -3'
miRNA:   3'- uaAGGCGGCCG---------------UGCCGCCccCCGUUG- -5'
10947 5' -64 NC_002794.1 + 22591 0.67 0.53073
Target:  5'- -gUCgCGCuCGGCACGGuCGGGacgcucgagccgaucGGGCcGCu -3'
miRNA:   3'- uaAG-GCG-GCCGUGCC-GCCC---------------CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 26655 0.7 0.365414
Target:  5'- --gCgGCCGGCucguCGGCGGGGuGG-AGCg -3'
miRNA:   3'- uaaGgCGGCCGu---GCCGCCCC-CCgUUG- -5'
10947 5' -64 NC_002794.1 + 30983 0.67 0.545707
Target:  5'- -cUCC-CCGGCgACGGCGGGGucuucGCcgGACg -3'
miRNA:   3'- uaAGGcGGCCG-UGCCGCCCCc----CG--UUG- -5'
10947 5' -64 NC_002794.1 + 32627 0.67 0.508556
Target:  5'- --cCCGCCGaCGaaGaGGGGGGCGACg -3'
miRNA:   3'- uaaGGCGGCcGUgcCgCCCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 32868 0.73 0.225351
Target:  5'- ----aGCCGGCggGCGGCGGcGGcGGCGGCg -3'
miRNA:   3'- uaaggCGGCCG--UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 34070 0.67 0.508556
Target:  5'- --cCCGCCGuucccGC-CGGCGGccGGGCAGCc -3'
miRNA:   3'- uaaGGCGGC-----CGuGCCGCCc-CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 34714 0.73 0.225351
Target:  5'- --cCCGCCGGCGCcacgaGGCGcGGGcGGCcGCa -3'
miRNA:   3'- uaaGGCGGCCGUG-----CCGC-CCC-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 34750 0.66 0.612515
Target:  5'- ---gCGCgaCGGCGCGGUGGGacGCGGCa -3'
miRNA:   3'- uaagGCG--GCCGUGCCGCCCccCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.