miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 37265 0.71 0.336
Target:  5'- -cUCCGUCGGCG-GGCGcGcGGGcGCGGCg -3'
miRNA:   3'- uaAGGCGGCCGUgCCGC-C-CCC-CGUUG- -5'
10947 5' -64 NC_002794.1 + 37743 0.71 0.308353
Target:  5'- --gCCGCCGGCgGCGGCGcGGcGGCGccgGCg -3'
miRNA:   3'- uaaGGCGGCCG-UGCCGC-CCcCCGU---UG- -5'
10947 5' -64 NC_002794.1 + 37867 0.72 0.275668
Target:  5'- -cUCCgGUCGGCgucucggGCGGCGGGGgcgguGGCGGCg -3'
miRNA:   3'- uaAGG-CGGCCG-------UGCCGCCCC-----CCGUUG- -5'
10947 5' -64 NC_002794.1 + 44298 0.71 0.328922
Target:  5'- --gCCggGCCGGCGaGGCGGGGaGCGACc -3'
miRNA:   3'- uaaGG--CGGCCGUgCCGCCCCcCGUUG- -5'
10947 5' -64 NC_002794.1 + 44349 0.66 0.574132
Target:  5'- ---gCGCCGGCgagaccgagagcGCGGCGGGc-GCGACg -3'
miRNA:   3'- uaagGCGGCCG------------UGCCGCCCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 49400 0.74 0.220212
Target:  5'- --gCCGUCGGcCACGGCGGccgcGGcGGCGGCg -3'
miRNA:   3'- uaaGGCGGCC-GUGCCGCC----CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 49598 0.67 0.508556
Target:  5'- -aUCgCGaUCGGCgACGGCGGGcgccGGCGGCg -3'
miRNA:   3'- uaAG-GC-GGCCG-UGCCGCCCc---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 50759 0.66 0.564613
Target:  5'- -gUCCGCCccgGGCgGCGGCGacGGcgcgucucGGGCGGCg -3'
miRNA:   3'- uaAGGCGG---CCG-UGCCGC--CC--------CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 53248 0.67 0.500341
Target:  5'- --cCCGCCGcGC-CGGCGucgccgcgcgacaacGGGGCGGCg -3'
miRNA:   3'- uaaGGCGGC-CGuGCCGCc--------------CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 53759 0.66 0.574132
Target:  5'- --gCCGCCGcuGC-CGGCGGcGGGacgcccGCGACg -3'
miRNA:   3'- uaaGGCGGC--CGuGCCGCC-CCC------CGUUG- -5'
10947 5' -64 NC_002794.1 + 55270 0.69 0.437805
Target:  5'- ----aGCCGGgggGCGGCGGuGGcGGCGACg -3'
miRNA:   3'- uaaggCGGCCg--UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 55303 0.69 0.412756
Target:  5'- ---gCGgCGGCgucGCGGCGGGcgcGGGCGGCu -3'
miRNA:   3'- uaagGCgGCCG---UGCCGCCC---CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 58055 0.75 0.178332
Target:  5'- --cCCGUCGGCggccccggcgGCGGCGGGacGGGCGGCc -3'
miRNA:   3'- uaaGGCGGCCG----------UGCCGCCC--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 61514 0.68 0.463703
Target:  5'- --cCCGCCGG-ACGGCGGccgccGGCGGCc -3'
miRNA:   3'- uaaGGCGGCCgUGCCGCCcc---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 65924 0.68 0.463703
Target:  5'- --gUCGCCGGCgGCGGUGGcgucGGCGGCg -3'
miRNA:   3'- uaaGGCGGCCG-UGCCGCCcc--CCGUUG- -5'
10947 5' -64 NC_002794.1 + 66725 0.7 0.380773
Target:  5'- --gCCGCCGccaccGC-CGGCGGuGGcGGCGGCg -3'
miRNA:   3'- uaaGGCGGC-----CGuGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 66851 0.73 0.252588
Target:  5'- --gCCGUCGGCGCGGCGaGGccGCGGCg -3'
miRNA:   3'- uaaGGCGGCCGUGCCGC-CCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 68448 0.7 0.373039
Target:  5'- gGUUCCGCCuGGCccguuucuucACGGCGcaguGGGGCAc- -3'
miRNA:   3'- -UAAGGCGG-CCG----------UGCCGCc---CCCCGUug -5'
10947 5' -64 NC_002794.1 + 69747 0.7 0.343189
Target:  5'- --aCgGCCGGCgACGccGCGGGGauGGCGACg -3'
miRNA:   3'- uaaGgCGGCCG-UGC--CGCCCC--CCGUUG- -5'
10947 5' -64 NC_002794.1 + 70216 0.67 0.527009
Target:  5'- --cUCGcCCGG-ACGGuCGGGcGGGCGGCc -3'
miRNA:   3'- uaaGGC-GGCCgUGCC-GCCC-CCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.