miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 71300 0.72 0.28878
Target:  5'- --gCCGCCGGCGCGcuCGGGcGGCGAg -3'
miRNA:   3'- uaaGGCGGCCGUGCc-GCCCcCCGUUg -5'
10947 5' -64 NC_002794.1 + 77982 0.67 0.51775
Target:  5'- -cUCCGCCucGGaACGGCGGGcguuguuccGGCGGCg -3'
miRNA:   3'- uaAGGCGG--CCgUGCCGCCCc--------CCGUUG- -5'
10947 5' -64 NC_002794.1 + 82953 0.67 0.544767
Target:  5'- --cCCGCCGcGCACGGCGcgcacgcgacgcaGGucGCGACg -3'
miRNA:   3'- uaaGGCGGC-CGUGCCGC-------------CCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 86991 0.67 0.508556
Target:  5'- -gUCCGgCGGCuuuCGGCGGcGuGGGUuccGGCg -3'
miRNA:   3'- uaAGGCgGCCGu--GCCGCC-C-CCCG---UUG- -5'
10947 5' -64 NC_002794.1 + 87036 0.68 0.463703
Target:  5'- -aUCCGgggaCCGGCGCGGCucGGGGCc-- -3'
miRNA:   3'- uaAGGC----GGCCGUGCCGccCCCCGuug -5'
10947 5' -64 NC_002794.1 + 87359 0.69 0.404606
Target:  5'- -gUCCGgCGGCgaGCGGCGuucuGGGCGGCg -3'
miRNA:   3'- uaAGGCgGCCG--UGCCGCcc--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 89727 0.68 0.480513
Target:  5'- -aUCCGCgCGGCGuCGGUccuuGGGGauucgcggcgauuGGCAGCu -3'
miRNA:   3'- uaAGGCG-GCCGU-GCCG----CCCC-------------CCGUUG- -5'
10947 5' -64 NC_002794.1 + 91599 0.67 0.545707
Target:  5'- --gCCGCUGGUGCGcGCGGccgaGGGCcACg -3'
miRNA:   3'- uaaGGCGGCCGUGC-CGCCc---CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 92261 0.66 0.564613
Target:  5'- --gUCGCUGGCgGCGGCGccGGGCGAg -3'
miRNA:   3'- uaaGGCGGCCG-UGCCGCccCCCGUUg -5'
10947 5' -64 NC_002794.1 + 94001 0.73 0.252588
Target:  5'- ---aCGCCGGCGcCGGCGGcGGGcCGGCg -3'
miRNA:   3'- uaagGCGGCCGU-GCCGCCcCCC-GUUG- -5'
10947 5' -64 NC_002794.1 + 94027 0.85 0.03778
Target:  5'- gGUUCCGCCGGCgggcccgagagcgGCGGCGgugcGGGGGCGGCg -3'
miRNA:   3'- -UAAGGCGGCCG-------------UGCCGC----CCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 94147 0.69 0.437805
Target:  5'- --aCCGCggCGGCgcuggACGGUGGGGGG-GACg -3'
miRNA:   3'- uaaGGCG--GCCG-----UGCCGCCCCCCgUUG- -5'
10947 5' -64 NC_002794.1 + 94274 0.79 0.099356
Target:  5'- -aUuuGCgCGGCGCGGCccgagcGGGGGGCGGCu -3'
miRNA:   3'- uaAggCG-GCCGUGCCG------CCCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 95751 0.66 0.593273
Target:  5'- ----gGCUGGUACucGCGGGGcGGCGGCc -3'
miRNA:   3'- uaaggCGGCCGUGc-CGCCCC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 95838 0.69 0.396557
Target:  5'- ---gCGgCGGCgGCGGcCGGGGaGGCGGCg -3'
miRNA:   3'- uaagGCgGCCG-UGCC-GCCCC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 99243 0.66 0.583687
Target:  5'- --aCCGCCGGacccCGCcGCGGaGGGGCu-- -3'
miRNA:   3'- uaaGGCGGCC----GUGcCGCC-CCCCGuug -5'
10947 5' -64 NC_002794.1 + 99569 0.66 0.583687
Target:  5'- -cUCCGCgGGCGagggggGuGCGGaGGGcGCGGCg -3'
miRNA:   3'- uaAGGCGgCCGUg-----C-CGCC-CCC-CGUUG- -5'
10947 5' -64 NC_002794.1 + 100314 0.69 0.421008
Target:  5'- --gCCGCUGGCACGcGCGGccGGCGcACg -3'
miRNA:   3'- uaaGGCGGCCGUGC-CGCCccCCGU-UG- -5'
10947 5' -64 NC_002794.1 + 100819 0.71 0.308353
Target:  5'- ---gUGCCGG-GCGGCGGGGgccGGCAGCc -3'
miRNA:   3'- uaagGCGGCCgUGCCGCCCC---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 101240 0.76 0.154486
Target:  5'- cGUUUCGCucCGGCGCGcaGCGGGGGGCcGCc -3'
miRNA:   3'- -UAAGGCG--GCCGUGC--CGCCCCCCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.