miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 192614 0.67 0.53633
Target:  5'- -cUCCGCCaGGUGCGGacaGucGGGCGGCc -3'
miRNA:   3'- uaAGGCGG-CCGUGCCg--CccCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 192146 0.66 0.602885
Target:  5'- --gCUGCCGGCGCGGuCGcGGcGGaGCcuGCg -3'
miRNA:   3'- uaaGGCGGCCGUGCC-GC-CC-CC-CGu-UG- -5'
10947 5' -64 NC_002794.1 + 191871 0.7 0.343189
Target:  5'- ----gGCCGGCgGCGGa-GGGGGCGGCg -3'
miRNA:   3'- uaaggCGGCCG-UGCCgcCCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 189316 0.7 0.350488
Target:  5'- aGUUCgGgCaGCugGuCGGGGGGCAGCa -3'
miRNA:   3'- -UAAGgCgGcCGugCcGCCCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 188359 0.67 0.53633
Target:  5'- --cCCGuCCGGCcgGCGGCGGccgaGGGCGu- -3'
miRNA:   3'- uaaGGC-GGCCG--UGCCGCCc---CCCGUug -5'
10947 5' -64 NC_002794.1 + 188249 0.71 0.308353
Target:  5'- --aCCGgCGGCggcggcgguaGCGGCGGGccGGGUAGCg -3'
miRNA:   3'- uaaGGCgGCCG----------UGCCGCCC--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 186274 0.71 0.328922
Target:  5'- --aCCGCCuGGCGCGGCGGcaccgcGGccaGGCGGCc -3'
miRNA:   3'- uaaGGCGG-CCGUGCCGCC------CC---CCGUUG- -5'
10947 5' -64 NC_002794.1 + 185169 0.77 0.130342
Target:  5'- -cUCCGCCGGCGCGGCGcGGucGGCGc- -3'
miRNA:   3'- uaAGGCGGCCGUGCCGC-CCc-CCGUug -5'
10947 5' -64 NC_002794.1 + 184572 0.67 0.545707
Target:  5'- ---gCGCCGcCGCGGCGGcGGcGGCcACg -3'
miRNA:   3'- uaagGCGGCcGUGCCGCC-CC-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 180745 0.7 0.388612
Target:  5'- --gCCGuCCGGCuccuCGGCGGcuucGGcGGCAACu -3'
miRNA:   3'- uaaGGC-GGCCGu---GCCGCC----CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 179679 0.71 0.315098
Target:  5'- --cCCGCggCGGCgACGGUGGcGGcGGCGACg -3'
miRNA:   3'- uaaGGCG--GCCG-UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 167158 0.66 0.583687
Target:  5'- uUUCCGCCGGCGuaugGGUGGcGauGCGACg -3'
miRNA:   3'- uAAGGCGGCCGUg---CCGCC-CccCGUUG- -5'
10947 5' -64 NC_002794.1 + 154361 0.67 0.545707
Target:  5'- --cCCGCgCGGUccaggccgcgGCGGCGGcGGGCAc- -3'
miRNA:   3'- uaaGGCG-GCCG----------UGCCGCCcCCCGUug -5'
10947 5' -64 NC_002794.1 + 153004 0.68 0.472513
Target:  5'- -aUCU-CCaGCACGGCGGacuGGGCGACg -3'
miRNA:   3'- uaAGGcGGcCGUGCCGCCc--CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 149696 0.66 0.612515
Target:  5'- --gCCGCgGGgGCcgccuGGCGGGuGGGCcGCc -3'
miRNA:   3'- uaaGGCGgCCgUG-----CCGCCC-CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 149276 0.76 0.147201
Target:  5'- --cCCGCCGGCggcGCGGCggcucgcucacGGGGGGCGGg -3'
miRNA:   3'- uaaGGCGGCCG---UGCCG-----------CCCCCCGUUg -5'
10947 5' -64 NC_002794.1 + 146993 0.71 0.315098
Target:  5'- --gCCGCCGGCcgacguCGGCGGcGGcGGCcGCc -3'
miRNA:   3'- uaaGGCGGCCGu-----GCCGCC-CC-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 145301 0.66 0.597115
Target:  5'- --cCCGCUGucguauuaaaccggcGCGCGGCGGGcGGCGc- -3'
miRNA:   3'- uaaGGCGGC---------------CGUGCCGCCCcCCGUug -5'
10947 5' -64 NC_002794.1 + 143741 0.72 0.276282
Target:  5'- --cCCGCCGGaCGCGccgcCGGGGGGCuccGCu -3'
miRNA:   3'- uaaGGCGGCC-GUGCc---GCCCCCCGu--UG- -5'
10947 5' -64 NC_002794.1 + 142321 0.69 0.396557
Target:  5'- ---gCGgCGGCGCaGGCGGcGGaGGCGGCg -3'
miRNA:   3'- uaagGCgGCCGUG-CCGCC-CC-CCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.