miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 142139 0.74 0.205392
Target:  5'- --aCCGCCGGguCACGGCGGaGGcGGCggUa -3'
miRNA:   3'- uaaGGCGGCC--GUGCCGCC-CC-CCGuuG- -5'
10947 5' -64 NC_002794.1 + 141389 0.68 0.48768
Target:  5'- -gUCCGUCguucggggGGCuCGGCGacgacgaugaccucGGGGGCGGCg -3'
miRNA:   3'- uaAGGCGG--------CCGuGCCGC--------------CCCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 138592 0.68 0.463703
Target:  5'- ---gCGUCGGCGCGGCGGaGaGCGGCu -3'
miRNA:   3'- uaagGCGGCCGUGCCGCCcCcCGUUG- -5'
10947 5' -64 NC_002794.1 + 137605 0.68 0.463703
Target:  5'- --gCCGCCGGCggucGCGGCGGcGGuGCccacGACg -3'
miRNA:   3'- uaaGGCGGCCG----UGCCGCCcCC-CG----UUG- -5'
10947 5' -64 NC_002794.1 + 132626 0.67 0.555137
Target:  5'- uGUUCUGuuGGCgaaACGacacucuCGGGGGGCAGa -3'
miRNA:   3'- -UAAGGCggCCG---UGCc------GCCCCCCGUUg -5'
10947 5' -64 NC_002794.1 + 131180 0.67 0.51775
Target:  5'- -cUCgaGCCGgagacaGCACGGCGccGGGGCGGCg -3'
miRNA:   3'- uaAGg-CGGC------CGUGCCGCc-CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 129924 0.7 0.349753
Target:  5'- -aUUCGCCaGGCcguggcgACGGCGGcGGcGGCGGCu -3'
miRNA:   3'- uaAGGCGG-CCG-------UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 129330 0.67 0.545707
Target:  5'- ---aCGcCCGGgGCGGCGGuuuccagaacGGGGUGACu -3'
miRNA:   3'- uaagGC-GGCCgUGCCGCC----------CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 125749 0.66 0.612515
Target:  5'- --gCCGCgGG-ACGGCGGccGGCGGCu -3'
miRNA:   3'- uaaGGCGgCCgUGCCGCCccCCGUUG- -5'
10947 5' -64 NC_002794.1 + 125653 0.66 0.564613
Target:  5'- cGUUCUGCCucGGCGCGcugaaCGGGcucuggcugacGGGCGACg -3'
miRNA:   3'- -UAAGGCGG--CCGUGCc----GCCC-----------CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 121986 0.66 0.602885
Target:  5'- --cCCGCCGaGCGCGGCcGGGaGCu-- -3'
miRNA:   3'- uaaGGCGGC-CGUGCCGcCCCcCGuug -5'
10947 5' -64 NC_002794.1 + 121483 0.7 0.343189
Target:  5'- --aCCGCCGGUucggacGCGGCcuccgccGGGGCGACg -3'
miRNA:   3'- uaaGGCGGCCG------UGCCGcc-----CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 120731 0.66 0.583687
Target:  5'- --gUCGUgGGCACGGCGGuccGGGaGCGc- -3'
miRNA:   3'- uaaGGCGgCCGUGCCGCC---CCC-CGUug -5'
10947 5' -64 NC_002794.1 + 120065 0.7 0.357896
Target:  5'- --gCCGCggaGGCcgacGCGGCGGuGGcGGCGACg -3'
miRNA:   3'- uaaGGCGg--CCG----UGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 119438 0.69 0.421008
Target:  5'- -gUCCGaCGGCgGCGGCGGuGGcGGCGu- -3'
miRNA:   3'- uaAGGCgGCCG-UGCCGCC-CC-CCGUug -5'
10947 5' -64 NC_002794.1 + 118248 0.68 0.446347
Target:  5'- -gUCgGCgGGCuggagguCGGcCGGGGcGGCGGCg -3'
miRNA:   3'- uaAGgCGgCCGu------GCC-GCCCC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 116945 0.66 0.612515
Target:  5'- -gUCC-CCGGCgGCGGCGucGGcGGGCGc- -3'
miRNA:   3'- uaAGGcGGCCG-UGCCGC--CC-CCCGUug -5'
10947 5' -64 NC_002794.1 + 116126 0.74 0.205392
Target:  5'- -gUCCGCCGcgGCGGCGGcGGcGGCGGCc -3'
miRNA:   3'- uaAGGCGGCcgUGCCGCC-CC-CCGUUG- -5'
10947 5' -64 NC_002794.1 + 116082 0.67 0.53633
Target:  5'- ---gCGCuCGGCGCGGCGGucgucgccGGGGuCGAg -3'
miRNA:   3'- uaagGCG-GCCGUGCCGCC--------CCCC-GUUg -5'
10947 5' -64 NC_002794.1 + 115956 0.66 0.564613
Target:  5'- --gUCGCCGGgGaccGUGGGGGGgAGCg -3'
miRNA:   3'- uaaGGCGGCCgUgc-CGCCCCCCgUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.