miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10947 5' -64 NC_002794.1 + 110324 0.66 0.602885
Target:  5'- --gCCGCCGcgacGC-CGcGCGGGGGGUc-- -3'
miRNA:   3'- uaaGGCGGC----CGuGC-CGCCCCCCGuug -5'
10947 5' -64 NC_002794.1 + 121986 0.66 0.602885
Target:  5'- --cCCGCCGaGCGCGGCcGGGaGCu-- -3'
miRNA:   3'- uaaGGCGGC-CGUGCCGcCCCcCGuug -5'
10947 5' -64 NC_002794.1 + 125749 0.66 0.612515
Target:  5'- --gCCGCgGG-ACGGCGGccGGCGGCu -3'
miRNA:   3'- uaaGGCGgCCgUGCCGCCccCCGUUG- -5'
10947 5' -64 NC_002794.1 + 149696 0.66 0.612515
Target:  5'- --gCCGCgGGgGCcgccuGGCGGGuGGGCcGCc -3'
miRNA:   3'- uaaGGCGgCCgUG-----CCGCCC-CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 116945 0.66 0.612515
Target:  5'- -gUCC-CCGGCgGCGGCGucGGcGGGCGc- -3'
miRNA:   3'- uaAGGcGGCCG-UGCCGC--CC-CCCGUug -5'
10947 5' -64 NC_002794.1 + 53759 0.66 0.574132
Target:  5'- --gCCGCCGcuGC-CGGCGGcGGGacgcccGCGACg -3'
miRNA:   3'- uaaGGCGGC--CGuGCCGCC-CCC------CGUUG- -5'
10947 5' -64 NC_002794.1 + 44349 0.66 0.574132
Target:  5'- ---gCGCCGGCgagaccgagagcGCGGCGGGc-GCGACg -3'
miRNA:   3'- uaagGCGGCCG------------UGCCGCCCccCGUUG- -5'
10947 5' -64 NC_002794.1 + 188359 0.67 0.53633
Target:  5'- --cCCGuCCGGCcgGCGGCGGccgaGGGCGu- -3'
miRNA:   3'- uaaGGC-GGCCG--UGCCGCCc---CCCGUug -5'
10947 5' -64 NC_002794.1 + 116082 0.67 0.53633
Target:  5'- ---gCGCuCGGCGCGGCGGucgucgccGGGGuCGAg -3'
miRNA:   3'- uaagGCG-GCCGUGCCGCC--------CCCC-GUUg -5'
10947 5' -64 NC_002794.1 + 91599 0.67 0.545707
Target:  5'- --gCCGCUGGUGCGcGCGGccgaGGGCcACg -3'
miRNA:   3'- uaaGGCGGCCGUGC-CGCCc---CCCGuUG- -5'
10947 5' -64 NC_002794.1 + 30983 0.67 0.545707
Target:  5'- -cUCC-CCGGCgACGGCGGGGucuucGCcgGACg -3'
miRNA:   3'- uaAGGcGGCCG-UGCCGCCCCc----CG--UUG- -5'
10947 5' -64 NC_002794.1 + 154361 0.67 0.545707
Target:  5'- --cCCGCgCGGUccaggccgcgGCGGCGGcGGGCAc- -3'
miRNA:   3'- uaaGGCG-GCCG----------UGCCGCCcCCCGUug -5'
10947 5' -64 NC_002794.1 + 184572 0.67 0.545707
Target:  5'- ---gCGCCGcCGCGGCGGcGGcGGCcACg -3'
miRNA:   3'- uaagGCGGCcGUGCCGCC-CC-CCGuUG- -5'
10947 5' -64 NC_002794.1 + 129330 0.67 0.545707
Target:  5'- ---aCGcCCGGgGCGGCGGuuuccagaacGGGGUGACu -3'
miRNA:   3'- uaagGC-GGCCgUGCCGCC----------CCCCGUUG- -5'
10947 5' -64 NC_002794.1 + 12217 0.67 0.555137
Target:  5'- --gCCGgCGGCGuCGGCGGcgccGGCGGCg -3'
miRNA:   3'- uaaGGCgGCCGU-GCCGCCcc--CCGUUG- -5'
10947 5' -64 NC_002794.1 + 132626 0.67 0.555137
Target:  5'- uGUUCUGuuGGCgaaACGacacucuCGGGGGGCAGa -3'
miRNA:   3'- -UAAGGCggCCG---UGCc------GCCCCCCGUUg -5'
10947 5' -64 NC_002794.1 + 50759 0.66 0.564613
Target:  5'- -gUCCGCCccgGGCgGCGGCGacGGcgcgucucGGGCGGCg -3'
miRNA:   3'- uaAGGCGG---CCG-UGCCGC--CC--------CCCGUUG- -5'
10947 5' -64 NC_002794.1 + 92261 0.66 0.564613
Target:  5'- --gUCGCUGGCgGCGGCGccGGGCGAg -3'
miRNA:   3'- uaaGGCGGCCG-UGCCGCccCCCGUUg -5'
10947 5' -64 NC_002794.1 + 115956 0.66 0.564613
Target:  5'- --gUCGCCGGgGaccGUGGGGGGgAGCg -3'
miRNA:   3'- uaaGGCGGCCgUgc-CGCCCCCCgUUG- -5'
10947 5' -64 NC_002794.1 + 125653 0.66 0.564613
Target:  5'- cGUUCUGCCucGGCGCGcugaaCGGGcucuggcugacGGGCGACg -3'
miRNA:   3'- -UAAGGCGG--CCGUGCc----GCCC-----------CCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.