miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 3' -61.5 NC_002794.1 + 181511 0.66 0.795886
Target:  5'- aCGC-UCG-UCCaCGUCgUCCGuUCGCCCGc -3'
miRNA:   3'- -GCGcAGCaAGG-GCAG-GGGC-AGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 185406 0.66 0.795886
Target:  5'- gGCG-CGggCCCGaCCgCCGUCGaCUCGa -3'
miRNA:   3'- gCGCaGCaaGGGCaGG-GGCAGC-GGGU- -5'
10948 3' -61.5 NC_002794.1 + 56527 0.66 0.795886
Target:  5'- gGCGcUCGUUCCgGUCgccaUCCGgagCGCUCGc -3'
miRNA:   3'- gCGC-AGCAAGGgCAG----GGGCa--GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 42929 0.66 0.787399
Target:  5'- cCGgGUCacgaUCCCGcUCgCCaUGUCGCCCAg -3'
miRNA:   3'- -GCgCAGca--AGGGC-AG-GG-GCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 82061 0.66 0.787399
Target:  5'- gGCGUCGUcCUCGgCCUCGcCgGCCCu -3'
miRNA:   3'- gCGCAGCAaGGGCaGGGGCaG-CGGGu -5'
10948 3' -61.5 NC_002794.1 + 73792 0.66 0.787399
Target:  5'- uGC--UGUaCCCGUCCCCGaccacCGCCCc -3'
miRNA:   3'- gCGcaGCAaGGGCAGGGGCa----GCGGGu -5'
10948 3' -61.5 NC_002794.1 + 143728 0.66 0.77879
Target:  5'- gGCGUCGUcCUCGcCCgCCGgacgCGCCg- -3'
miRNA:   3'- gCGCAGCAaGGGCaGG-GGCa---GCGGgu -5'
10948 3' -61.5 NC_002794.1 + 118304 0.66 0.77879
Target:  5'- gCGCGUCG--CUCGUCgUCGUCGUCgCGa -3'
miRNA:   3'- -GCGCAGCaaGGGCAGgGGCAGCGG-GU- -5'
10948 3' -61.5 NC_002794.1 + 194400 0.66 0.776185
Target:  5'- cCGCccgGUCGUUCgCGUCCgCCaccgccguaaacacGUCGUCCGc -3'
miRNA:   3'- -GCG---CAGCAAGgGCAGG-GG--------------CAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 187561 0.66 0.770067
Target:  5'- cCGcCGUCGggCCCGUaCCCGcCGUCg- -3'
miRNA:   3'- -GC-GCAGCaaGGGCAgGGGCaGCGGgu -5'
10948 3' -61.5 NC_002794.1 + 99399 0.66 0.761236
Target:  5'- gGCGcCGUccgCCCGcCCgCCGUCGCagCAg -3'
miRNA:   3'- gCGCaGCAa--GGGCaGG-GGCAGCGg-GU- -5'
10948 3' -61.5 NC_002794.1 + 53891 0.66 0.761236
Target:  5'- -uCGUCGggacUCCggcggCGUCCUCGUCGCCg- -3'
miRNA:   3'- gcGCAGCa---AGG-----GCAGGGGCAGCGGgu -5'
10948 3' -61.5 NC_002794.1 + 117202 0.66 0.761236
Target:  5'- gGCGUCGggCCCGggcggCUCCGgccgCGUCa- -3'
miRNA:   3'- gCGCAGCaaGGGCa----GGGGCa---GCGGgu -5'
10948 3' -61.5 NC_002794.1 + 72925 0.66 0.761236
Target:  5'- cCGcCGUCGgagCCggCGUCCgCG-CGCCCAc -3'
miRNA:   3'- -GC-GCAGCaa-GG--GCAGGgGCaGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 131532 0.66 0.752306
Target:  5'- gGCGcCGggCCCGUCaucaCGgccUCGCCCGu -3'
miRNA:   3'- gCGCaGCaaGGGCAGgg--GC---AGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 65154 0.66 0.752306
Target:  5'- uGgGUCGccgUCCCGUCCgUGgCGCCgAg -3'
miRNA:   3'- gCgCAGCa--AGGGCAGGgGCaGCGGgU- -5'
10948 3' -61.5 NC_002794.1 + 188348 0.66 0.743283
Target:  5'- gCGcCGUCGcgCCCGUCCggCCGgcggCGgCCGa -3'
miRNA:   3'- -GC-GCAGCaaGGGCAGG--GGCa---GCgGGU- -5'
10948 3' -61.5 NC_002794.1 + 30040 0.66 0.74056
Target:  5'- gCGCGUgaacgaccgagaccCGggCCCGcggggUCCgGUCGCCCGg -3'
miRNA:   3'- -GCGCA--------------GCaaGGGCa----GGGgCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 72801 0.67 0.734176
Target:  5'- aCGcCGcCcugCCCG-CUCCGUCGCCCGu -3'
miRNA:   3'- -GC-GCaGcaaGGGCaGGGGCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 183525 0.67 0.734176
Target:  5'- uCGCGgcCGUgCgCG-CCCCGUCcGCCCGg -3'
miRNA:   3'- -GCGCa-GCAaGgGCaGGGGCAG-CGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.