miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 3' -61.5 NC_002794.1 + 123122 0.77 0.232619
Target:  5'- uGCGUCGagcgCCaCGUCCCCGUCGUgCGc -3'
miRNA:   3'- gCGCAGCaa--GG-GCAGGGGCAGCGgGU- -5'
10948 3' -61.5 NC_002794.1 + 32657 0.77 0.237947
Target:  5'- gGCGaCGgcgCCGUCCCCGUCGUCCGc -3'
miRNA:   3'- gCGCaGCaagGGCAGGGGCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 634 0.76 0.260283
Target:  5'- gGCGuUCGccUCCCGUCCCCGcCGCgCAg -3'
miRNA:   3'- gCGC-AGCa-AGGGCAGGGGCaGCGgGU- -5'
10948 3' -61.5 NC_002794.1 + 68909 0.75 0.284299
Target:  5'- uCGCGUCGcggggCUcgcggCGUCCUCGUCGCCCGc -3'
miRNA:   3'- -GCGCAGCaa---GG-----GCAGGGGCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 58041 0.75 0.310033
Target:  5'- cCGCGcCG--CCCGUCCCCGUCGgcggcCCCGg -3'
miRNA:   3'- -GCGCaGCaaGGGCAGGGGCAGC-----GGGU- -5'
10948 3' -61.5 NC_002794.1 + 116984 0.74 0.351887
Target:  5'- aGCagGUCGUUCgCCGUCCgCGgcgucUCGCCCAg -3'
miRNA:   3'- gCG--CAGCAAG-GGCAGGgGC-----AGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 24034 0.73 0.366701
Target:  5'- gGCGaCGgcggUCCC-UCCCCGUCcGCCCGc -3'
miRNA:   3'- gCGCaGCa---AGGGcAGGGGCAG-CGGGU- -5'
10948 3' -61.5 NC_002794.1 + 55516 0.73 0.389715
Target:  5'- uGCGccaCGccagCCCGgcggCCCCGUCGCCCu -3'
miRNA:   3'- gCGCa--GCaa--GGGCa---GGGGCAGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 7982 0.72 0.413653
Target:  5'- gGCcUCGUcccccaUCCCGUCCCCGUC-CUCGg -3'
miRNA:   3'- gCGcAGCA------AGGGCAGGGGCAGcGGGU- -5'
10948 3' -61.5 NC_002794.1 + 16444 0.72 0.438476
Target:  5'- cCGCGcUUGUUCCCGaCUCCGacUCGUCCGg -3'
miRNA:   3'- -GCGC-AGCAAGGGCaGGGGC--AGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 16522 0.71 0.472855
Target:  5'- gGCGUCGccacCgCCGUCCCCGgCGUCCc -3'
miRNA:   3'- gCGCAGCaa--G-GGCAGGGGCaGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 82352 0.71 0.481661
Target:  5'- aCGCcaaGcgCCCGUCCUCGcCGCCCGa -3'
miRNA:   3'- -GCGcagCaaGGGCAGGGGCaGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 62635 0.71 0.490546
Target:  5'- gGCGUCGgacCCCGUCgCCCGccucggcaaacUCGUCCu -3'
miRNA:   3'- gCGCAGCaa-GGGCAG-GGGC-----------AGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 46125 0.71 0.490546
Target:  5'- cCGCGUCGgcuccCCCGUCCgagucggcgUCGaUCGCCCu -3'
miRNA:   3'- -GCGCAGCaa---GGGCAGG---------GGC-AGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 49855 0.71 0.508539
Target:  5'- cCGCGUCGgcggcgCCCGcCaCCCGgacguggagCGCCCGc -3'
miRNA:   3'- -GCGCAGCaa----GGGCaG-GGGCa--------GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 188315 0.7 0.526805
Target:  5'- -cCGUCGUcgUCGUCCUCGUCGCCg- -3'
miRNA:   3'- gcGCAGCAagGGCAGGGGCAGCGGgu -5'
10948 3' -61.5 NC_002794.1 + 18896 0.7 0.554642
Target:  5'- aGCGUCa--CCCcUCCCCGacggCGCCCGg -3'
miRNA:   3'- gCGCAGcaaGGGcAGGGGCa---GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 97689 0.7 0.554642
Target:  5'- gGCGcCGUcaacgcgCCCGUCCgCGUugUGCCCAa -3'
miRNA:   3'- gCGCaGCAa------GGGCAGGgGCA--GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 71829 0.69 0.573441
Target:  5'- uCGCGagGaUCgCCGUCCCCGUCGacgggaCCu -3'
miRNA:   3'- -GCGCagCaAG-GGCAGGGGCAGCg-----GGu -5'
10948 3' -61.5 NC_002794.1 + 148529 0.69 0.592384
Target:  5'- uGCGcCGcUUCCCGUgCCUCGUCGgCUg -3'
miRNA:   3'- gCGCaGC-AAGGGCA-GGGGCAGCgGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.