miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 3' -61.5 NC_002794.1 + 51178 0.67 0.734176
Target:  5'- aCGCGgccguucgccgaUCGUUCUCGUUCgC-UCGCCCGc -3'
miRNA:   3'- -GCGC------------AGCAAGGGCAGGgGcAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 66348 0.67 0.724992
Target:  5'- cCGCGUCcccUUCuUCGUCCCaguCGUCGCCg- -3'
miRNA:   3'- -GCGCAGc--AAG-GGCAGGG---GCAGCGGgu -5'
10948 3' -61.5 NC_002794.1 + 8215 0.67 0.724992
Target:  5'- uGCGggc--CCCGUCCCCcUCGUCCu -3'
miRNA:   3'- gCGCagcaaGGGCAGGGGcAGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 131637 0.67 0.706421
Target:  5'- aGCGUCGUcgcgCCCGUUCUCaaCGCUCu -3'
miRNA:   3'- gCGCAGCAa---GGGCAGGGGcaGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 67859 0.67 0.700805
Target:  5'- cCGCG-CGUcacccggcgccaUCCCGaagcuccgagcggacUCCCCcUCGCCCGu -3'
miRNA:   3'- -GCGCaGCA------------AGGGC---------------AGGGGcAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 28715 0.67 0.69705
Target:  5'- cCGuCGUCGccgccgUCCgaccgUGUCCCCGagGCCCGu -3'
miRNA:   3'- -GC-GCAGCa-----AGG-----GCAGGGGCagCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 61334 0.67 0.687632
Target:  5'- aCGCGaCuUUCUCGcUCCCCGaCGUCCAg -3'
miRNA:   3'- -GCGCaGcAAGGGC-AGGGGCaGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 20858 0.67 0.687632
Target:  5'- uGCGcUCGUgccaCCCGUCCCCGcgagucacgUCGaCCUc -3'
miRNA:   3'- gCGC-AGCAa---GGGCAGGGGC---------AGC-GGGu -5'
10948 3' -61.5 NC_002794.1 + 1228 0.68 0.678173
Target:  5'- gGCGU-GUUcuauaaCCCGUCUCCGagcCGCCCGg -3'
miRNA:   3'- gCGCAgCAA------GGGCAGGGGCa--GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 66668 0.68 0.668682
Target:  5'- gGCGUCGUggucaaCGgCCCCGgCGCCCc -3'
miRNA:   3'- gCGCAGCAagg---GCaGGGGCaGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 83863 0.68 0.664877
Target:  5'- aGcCGUCG-UCCCGgucggcgcgacggCCCCGggcucggCGCCCGa -3'
miRNA:   3'- gC-GCAGCaAGGGCa------------GGGGCa------GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 67316 0.68 0.656305
Target:  5'- uCGgGUCGcgCCCGUacaucgccagggugCCCCGgcgcCGCCCc -3'
miRNA:   3'- -GCgCAGCaaGGGCA--------------GGGGCa---GCGGGu -5'
10948 3' -61.5 NC_002794.1 + 107271 0.68 0.64008
Target:  5'- cCGCGcCGU--CCG-CCgCCGUCGCCCc -3'
miRNA:   3'- -GCGCaGCAagGGCaGG-GGCAGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 90497 0.69 0.620973
Target:  5'- gCGCGaUCGg--CCGUCCCCGcCGCgCGc -3'
miRNA:   3'- -GCGC-AGCaagGGCAGGGGCaGCGgGU- -5'
10948 3' -61.5 NC_002794.1 + 35786 0.69 0.620973
Target:  5'- gGCGUCGUcUCCGgcgugaCCCUG-CGCCCc -3'
miRNA:   3'- gCGCAGCAaGGGCa-----GGGGCaGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 130636 0.69 0.611428
Target:  5'- gGCGUCGccggcccgCCCGccgCCCCGcCGCCg- -3'
miRNA:   3'- gCGCAGCaa------GGGCa--GGGGCaGCGGgu -5'
10948 3' -61.5 NC_002794.1 + 16603 0.69 0.611428
Target:  5'- gGCGUCGccaccCCCGUCCCCacccccCGCgCCAc -3'
miRNA:   3'- gCGCAGCaa---GGGCAGGGGca----GCG-GGU- -5'
10948 3' -61.5 NC_002794.1 + 116519 0.69 0.611428
Target:  5'- gGCGUagcCGUccaggUCCCGggUCUCCGUCGuCCCGu -3'
miRNA:   3'- gCGCA---GCA-----AGGGC--AGGGGCAGC-GGGU- -5'
10948 3' -61.5 NC_002794.1 + 190463 0.69 0.611428
Target:  5'- gGCGUCGcgCCCGacgCCCacgggugccccaCGcCGCCCAg -3'
miRNA:   3'- gCGCAGCaaGGGCa--GGG------------GCaGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 63350 0.69 0.601896
Target:  5'- uCGC-UCGcccUCUCGcUCCCGUCGCCCGc -3'
miRNA:   3'- -GCGcAGCa--AGGGCaGGGGCAGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.