miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 3' -61.5 NC_002794.1 + 634 0.76 0.260283
Target:  5'- gGCGuUCGccUCCCGUCCCCGcCGCgCAg -3'
miRNA:   3'- gCGC-AGCa-AGGGCAGGGGCaGCGgGU- -5'
10948 3' -61.5 NC_002794.1 + 1228 0.68 0.678173
Target:  5'- gGCGU-GUUcuauaaCCCGUCUCCGagcCGCCCGg -3'
miRNA:   3'- gCGCAgCAA------GGGCAGGGGCa--GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 7982 0.72 0.413653
Target:  5'- gGCcUCGUcccccaUCCCGUCCCCGUC-CUCGg -3'
miRNA:   3'- gCGcAGCA------AGGGCAGGGGCAGcGGGU- -5'
10948 3' -61.5 NC_002794.1 + 8215 0.67 0.724992
Target:  5'- uGCGggc--CCCGUCCCCcUCGUCCu -3'
miRNA:   3'- gCGCagcaaGGGCAGGGGcAGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 16444 0.72 0.438476
Target:  5'- cCGCGcUUGUUCCCGaCUCCGacUCGUCCGg -3'
miRNA:   3'- -GCGC-AGCAAGGGCaGGGGC--AGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 16522 0.71 0.472855
Target:  5'- gGCGUCGccacCgCCGUCCCCGgCGUCCc -3'
miRNA:   3'- gCGCAGCaa--G-GGCAGGGGCaGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 16603 0.69 0.611428
Target:  5'- gGCGUCGccaccCCCGUCCCCacccccCGCgCCAc -3'
miRNA:   3'- gCGCAGCaa---GGGCAGGGGca----GCG-GGU- -5'
10948 3' -61.5 NC_002794.1 + 18896 0.7 0.554642
Target:  5'- aGCGUCa--CCCcUCCCCGacggCGCCCGg -3'
miRNA:   3'- gCGCAGcaaGGGcAGGGGCa---GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 20858 0.67 0.687632
Target:  5'- uGCGcUCGUgccaCCCGUCCCCGcgagucacgUCGaCCUc -3'
miRNA:   3'- gCGC-AGCAa---GGGCAGGGGC---------AGC-GGGu -5'
10948 3' -61.5 NC_002794.1 + 21976 0.69 0.601896
Target:  5'- gCGcCGUCGUcUCCGcgaCCCGUCGCCg- -3'
miRNA:   3'- -GC-GCAGCAaGGGCag-GGGCAGCGGgu -5'
10948 3' -61.5 NC_002794.1 + 24034 0.73 0.366701
Target:  5'- gGCGaCGgcggUCCC-UCCCCGUCcGCCCGc -3'
miRNA:   3'- gCGCaGCa---AGGGcAGGGGCAG-CGGGU- -5'
10948 3' -61.5 NC_002794.1 + 28715 0.67 0.69705
Target:  5'- cCGuCGUCGccgccgUCCgaccgUGUCCCCGagGCCCGu -3'
miRNA:   3'- -GC-GCAGCa-----AGG-----GCAGGGGCagCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 30040 0.66 0.74056
Target:  5'- gCGCGUgaacgaccgagaccCGggCCCGcggggUCCgGUCGCCCGg -3'
miRNA:   3'- -GCGCA--------------GCaaGGGCa----GGGgCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 32657 0.77 0.237947
Target:  5'- gGCGaCGgcgCCGUCCCCGUCGUCCGc -3'
miRNA:   3'- gCGCaGCaagGGCAGGGGCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 35786 0.69 0.620973
Target:  5'- gGCGUCGUcUCCGgcgugaCCCUG-CGCCCc -3'
miRNA:   3'- gCGCAGCAaGGGCa-----GGGGCaGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 42929 0.66 0.787399
Target:  5'- cCGgGUCacgaUCCCGcUCgCCaUGUCGCCCAg -3'
miRNA:   3'- -GCgCAGca--AGGGC-AG-GG-GCAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 46125 0.71 0.490546
Target:  5'- cCGCGUCGgcuccCCCGUCCgagucggcgUCGaUCGCCCu -3'
miRNA:   3'- -GCGCAGCaa---GGGCAGG---------GGC-AGCGGGu -5'
10948 3' -61.5 NC_002794.1 + 49855 0.71 0.508539
Target:  5'- cCGCGUCGgcggcgCCCGcCaCCCGgacguggagCGCCCGc -3'
miRNA:   3'- -GCGCAGCaa----GGGCaG-GGGCa--------GCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 51178 0.67 0.734176
Target:  5'- aCGCGgccguucgccgaUCGUUCUCGUUCgC-UCGCCCGc -3'
miRNA:   3'- -GCGC------------AGCAAGGGCAGGgGcAGCGGGU- -5'
10948 3' -61.5 NC_002794.1 + 53891 0.66 0.761236
Target:  5'- -uCGUCGggacUCCggcggCGUCCUCGUCGCCg- -3'
miRNA:   3'- gcGCAGCa---AGG-----GCAGGGGCAGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.