miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 5' -55.7 NC_002794.1 + 126282 0.66 0.960183
Target:  5'- cGCUGGGcuugcuGUGCGccgcGCGCCUGgCGGUGc -3'
miRNA:   3'- -CGACCUc-----UAUGC----UGCGGACaGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 170728 0.66 0.960183
Target:  5'- aGUUGG-GAaacCGAUGCCgUGaCGGCGAa -3'
miRNA:   3'- -CGACCuCUau-GCUGCGG-ACaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 115801 0.66 0.960183
Target:  5'- uCUGGAGcguCGGCagaagcucuuccGCCUGgaUCGGCGGg -3'
miRNA:   3'- cGACCUCuauGCUG------------CGGAC--AGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 107509 0.66 0.956586
Target:  5'- --cGGGGGUGCcggucGACGCCgacgGcCGGCGc -3'
miRNA:   3'- cgaCCUCUAUG-----CUGCGGa---CaGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 146981 0.66 0.956586
Target:  5'- --cGcGAGGU-CGGCGCCgccggccgacGUCGGCGGc -3'
miRNA:   3'- cgaC-CUCUAuGCUGCGGa---------CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 160326 0.66 0.956586
Target:  5'- gGCUGGAGcgcggauggGCGACGaauUUGaccgCGGCGAg -3'
miRNA:   3'- -CGACCUCua-------UGCUGCg--GACa---GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 14646 0.66 0.952774
Target:  5'- --cGGAGAcgcCGGCGCCg--CGGCGu -3'
miRNA:   3'- cgaCCUCUau-GCUGCGGacaGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 151826 0.66 0.952774
Target:  5'- --gGGAcGAUccccCGACGCCguUCGGCGAg -3'
miRNA:   3'- cgaCCU-CUAu---GCUGCGGacAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 38150 0.66 0.952774
Target:  5'- aGCaGGAGGUAggcgagcaGGCGgCUGcgcUCGGCGAc -3'
miRNA:   3'- -CGaCCUCUAUg-------CUGCgGAC---AGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 79457 0.66 0.952774
Target:  5'- cGC-GGAGAcgACGACGCCgccaGUCGccacCGAg -3'
miRNA:   3'- -CGaCCUCUa-UGCUGCGGa---CAGCc---GCU- -5'
10948 5' -55.7 NC_002794.1 + 59183 0.66 0.952774
Target:  5'- uGCUGGAccccguggcGGU-CGACGCgcacGUCGGCGu -3'
miRNA:   3'- -CGACCU---------CUAuGCUGCGga--CAGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 59279 0.66 0.950381
Target:  5'- uGCUGGAGAUccgcucgccgcuCGACGCCgcgcagcgccaCGGCGc -3'
miRNA:   3'- -CGACCUCUAu-----------GCUGCGGaca--------GCCGCu -5'
10948 5' -55.7 NC_002794.1 + 111752 0.66 0.944489
Target:  5'- aGCUGGcGccgcGCGGCGCC-GUCggGGCGGg -3'
miRNA:   3'- -CGACCuCua--UGCUGCGGaCAG--CCGCU- -5'
10948 5' -55.7 NC_002794.1 + 86979 0.66 0.940011
Target:  5'- aGCUGcgacGAGGUcCGGCGgCUuUCGGCGGc -3'
miRNA:   3'- -CGAC----CUCUAuGCUGCgGAcAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 37730 0.66 0.940011
Target:  5'- --cGcGAGcgGCGGCGCCgccggCGGCGGc -3'
miRNA:   3'- cgaC-CUCuaUGCUGCGGaca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 89509 0.66 0.940011
Target:  5'- gGCaGGAGAccGCGuAgGCCagaGUCGGCGGa -3'
miRNA:   3'- -CGaCCUCUa-UGC-UgCGGa--CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 86812 0.66 0.940011
Target:  5'- --gGGAGAUccagggccGCGAccuCGCCgggaucggGUCGGCGGc -3'
miRNA:   3'- cgaCCUCUA--------UGCU---GCGGa-------CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 141503 0.66 0.940011
Target:  5'- cGCaGGGGucccugucgcUACGACGCCUG--GGCGGg -3'
miRNA:   3'- -CGaCCUCu---------AUGCUGCGGACagCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 137445 0.67 0.935307
Target:  5'- uCUGGAacGAcucgGCGGaaucCGCCgUGUCGGCGGc -3'
miRNA:   3'- cGACCU--CUa---UGCU----GCGG-ACAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 80184 0.67 0.935307
Target:  5'- cGUUGGGGuAUACcggcuACGCCUGggCGGuCGAc -3'
miRNA:   3'- -CGACCUC-UAUGc----UGCGGACa-GCC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.