miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 5' -55.7 NC_002794.1 + 118255 0.81 0.267149
Target:  5'- gGCUGGAGGUcggccggggcgGCGGCGCCggcGUCGGgGAc -3'
miRNA:   3'- -CGACCUCUA-----------UGCUGCGGa--CAGCCgCU- -5'
10948 5' -55.7 NC_002794.1 + 145731 0.79 0.327675
Target:  5'- cGCUGGAGGcgGCGGCGCCggcaucgaCGGCGAc -3'
miRNA:   3'- -CGACCUCUa-UGCUGCGGaca-----GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 102457 0.78 0.397774
Target:  5'- cGCUcgaGGAGAUGCGGCGC--GUCGGCGu -3'
miRNA:   3'- -CGA---CCUCUAUGCUGCGgaCAGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 98951 0.77 0.43187
Target:  5'- gGCUGGGGcucGUGCugGGCGCC-GUCGGCGGc -3'
miRNA:   3'- -CGACCUC---UAUG--CUGCGGaCAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 117363 0.75 0.543248
Target:  5'- cGUUGGAGcgGCGGgcCGCCUGcacggucgCGGCGAa -3'
miRNA:   3'- -CGACCUCuaUGCU--GCGGACa-------GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 142021 0.74 0.582586
Target:  5'- uGCcGGAGGUGCuuCGCCUGUCGcGgGAc -3'
miRNA:   3'- -CGaCCUCUAUGcuGCGGACAGC-CgCU- -5'
10948 5' -55.7 NC_002794.1 + 110619 0.74 0.602483
Target:  5'- aGCgGGAGccGCGGCGCCgcggCGGCGGg -3'
miRNA:   3'- -CGaCCUCuaUGCUGCGGaca-GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 176731 0.73 0.642472
Target:  5'- uCUGGAGAUGCGACcuguggGUCUG-CGGCa- -3'
miRNA:   3'- cGACCUCUAUGCUG------CGGACaGCCGcu -5'
10948 5' -55.7 NC_002794.1 + 120764 0.72 0.682333
Target:  5'- uGCUGGcccuGcUGCGACGCCgauucgccUCGGCGAg -3'
miRNA:   3'- -CGACCu---CuAUGCUGCGGac------AGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 110339 0.71 0.739813
Target:  5'- cGCgGGGGGUcuccgccgugGCGACGCCUcgucgucGUCGGCu- -3'
miRNA:   3'- -CGaCCUCUA----------UGCUGCGGA-------CAGCCGcu -5'
10948 5' -55.7 NC_002794.1 + 94437 0.71 0.75961
Target:  5'- cCUGGAGGccUACGGCGCggaggaGUCGGUGGc -3'
miRNA:   3'- cGACCUCU--AUGCUGCGga----CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 191660 0.71 0.75961
Target:  5'- cGCcGGGGG-ACGGCGCCggcagCGGCGGc -3'
miRNA:   3'- -CGaCCUCUaUGCUGCGGaca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 48586 0.71 0.75961
Target:  5'- aGCcGGAGGaGCGGCGCgUcgccGUCGGCGu -3'
miRNA:   3'- -CGaCCUCUaUGCUGCGgA----CAGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 137857 0.7 0.795937
Target:  5'- -aUGGAGcgcgaccacauGUGCGGCGUCUgGUgGGCGAu -3'
miRNA:   3'- cgACCUC-----------UAUGCUGCGGA-CAgCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 100359 0.7 0.819211
Target:  5'- aGCUGGAGGUGgacugcgagguggcCGACGUCcG-CGGCGu -3'
miRNA:   3'- -CGACCUCUAU--------------GCUGCGGaCaGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 106956 0.7 0.821727
Target:  5'- cCUGGAGAcacGCGuCGCCUcgcgCGGCGGc -3'
miRNA:   3'- cGACCUCUa--UGCuGCGGAca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 92263 0.69 0.846037
Target:  5'- cGCUGGcGGcgGCGccgggcgaggcGCGCaagGUCGGCGAc -3'
miRNA:   3'- -CGACC-UCuaUGC-----------UGCGga-CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 131184 0.69 0.846037
Target:  5'- aGCcGGAGAcagcACGGCGCCggggCGGCGc -3'
miRNA:   3'- -CGaCCUCUa---UGCUGCGGaca-GCCGCu -5'
10948 5' -55.7 NC_002794.1 + 84296 0.69 0.868679
Target:  5'- --gGGAGcgGCGGCGCUUccUGGCGAc -3'
miRNA:   3'- cgaCCUCuaUGCUGCGGAcaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 110476 0.68 0.875122
Target:  5'- gGCUcgGGGGGUagagaggcggugGCGGCGCCUggagaaaGUCGGuCGAg -3'
miRNA:   3'- -CGA--CCUCUA------------UGCUGCGGA-------CAGCC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.