miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 5' -55.7 NC_002794.1 + 142314 0.67 0.935307
Target:  5'- gGC-GGAGGcgGCGGCGCagg-CGGCGGa -3'
miRNA:   3'- -CGaCCUCUa-UGCUGCGgacaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 95816 0.67 0.930376
Target:  5'- --gGGAGcgGCGGCgGCCgggGgagCGGCGGc -3'
miRNA:   3'- cgaCCUCuaUGCUG-CGGa--Ca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 36975 0.67 0.930376
Target:  5'- cGCaGGAGGaucGCG-CGCagGUCGGCGAg -3'
miRNA:   3'- -CGaCCUCUa--UGCuGCGgaCAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 121506 0.67 0.930376
Target:  5'- cGCcGGGGcgACGACGuCCgaacCGGCGGu -3'
miRNA:   3'- -CGaCCUCuaUGCUGC-GGaca-GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 115745 0.67 0.925215
Target:  5'- cCUGGAucaGGUACGGCGCga-UCGGCGc -3'
miRNA:   3'- cGACCU---CUAUGCUGCGgacAGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 62055 0.67 0.919827
Target:  5'- cGgUGGccgacgccGGcgGCGACGCCgg-CGGCGAc -3'
miRNA:   3'- -CgACC--------UCuaUGCUGCGGacaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 96179 0.68 0.908367
Target:  5'- cCUGGuGcacCGGCGCCUGcCGGcCGAg -3'
miRNA:   3'- cGACCuCuauGCUGCGGACaGCC-GCU- -5'
10948 5' -55.7 NC_002794.1 + 145799 0.68 0.889496
Target:  5'- gGCUcGGAcg-ACGACGCCgccgccggCGGCGAg -3'
miRNA:   3'- -CGA-CCUcuaUGCUGCGGaca-----GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 112329 0.68 0.888167
Target:  5'- gGC-GGGGAgcgcgccggccgGCGGCGCCgg-CGGCGGg -3'
miRNA:   3'- -CGaCCUCUa-----------UGCUGCGGacaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 124814 0.68 0.875827
Target:  5'- uGCaGGAcacGUGCGA--CCUGUCGGCGAc -3'
miRNA:   3'- -CGaCCUc--UAUGCUgcGGACAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 110476 0.68 0.875122
Target:  5'- gGCUcgGGGGGUagagaggcggugGCGGCGCCUggagaaaGUCGGuCGAg -3'
miRNA:   3'- -CGA--CCUCUA------------UGCUGCGGA-------CAGCC-GCU- -5'
10948 5' -55.7 NC_002794.1 + 84296 0.69 0.868679
Target:  5'- --gGGAGcgGCGGCGCUUccUGGCGAc -3'
miRNA:   3'- cgaCCUCuaUGCUGCGGAcaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 131184 0.69 0.846037
Target:  5'- aGCcGGAGAcagcACGGCGCCggggCGGCGc -3'
miRNA:   3'- -CGaCCUCUa---UGCUGCGGaca-GCCGCu -5'
10948 5' -55.7 NC_002794.1 + 92263 0.69 0.846037
Target:  5'- cGCUGGcGGcgGCGccgggcgaggcGCGCaagGUCGGCGAc -3'
miRNA:   3'- -CGACC-UCuaUGC-----------UGCGga-CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 106956 0.7 0.821727
Target:  5'- cCUGGAGAcacGCGuCGCCUcgcgCGGCGGc -3'
miRNA:   3'- cGACCUCUa--UGCuGCGGAca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 100359 0.7 0.819211
Target:  5'- aGCUGGAGGUGgacugcgagguggcCGACGUCcG-CGGCGu -3'
miRNA:   3'- -CGACCUCUAU--------------GCUGCGGaCaGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 137857 0.7 0.795937
Target:  5'- -aUGGAGcgcgaccacauGUGCGGCGUCUgGUgGGCGAu -3'
miRNA:   3'- cgACCUC-----------UAUGCUGCGGA-CAgCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 191660 0.71 0.75961
Target:  5'- cGCcGGGGG-ACGGCGCCggcagCGGCGGc -3'
miRNA:   3'- -CGaCCUCUaUGCUGCGGaca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 48586 0.71 0.75961
Target:  5'- aGCcGGAGGaGCGGCGCgUcgccGUCGGCGu -3'
miRNA:   3'- -CGaCCUCUaUGCUGCGgA----CAGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 94437 0.71 0.75961
Target:  5'- cCUGGAGGccUACGGCGCggaggaGUCGGUGGc -3'
miRNA:   3'- cGACCUCU--AUGCUGCGga----CAGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.