miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10948 5' -55.7 NC_002794.1 + 14646 0.66 0.952774
Target:  5'- --cGGAGAcgcCGGCGCCg--CGGCGu -3'
miRNA:   3'- cgaCCUCUau-GCUGCGGacaGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 36975 0.67 0.930376
Target:  5'- cGCaGGAGGaucGCG-CGCagGUCGGCGAg -3'
miRNA:   3'- -CGaCCUCUa--UGCuGCGgaCAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 37730 0.66 0.940011
Target:  5'- --cGcGAGcgGCGGCGCCgccggCGGCGGc -3'
miRNA:   3'- cgaC-CUCuaUGCUGCGGaca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 38150 0.66 0.952774
Target:  5'- aGCaGGAGGUAggcgagcaGGCGgCUGcgcUCGGCGAc -3'
miRNA:   3'- -CGaCCUCUAUg-------CUGCgGAC---AGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 48586 0.71 0.75961
Target:  5'- aGCcGGAGGaGCGGCGCgUcgccGUCGGCGu -3'
miRNA:   3'- -CGaCCUCUaUGCUGCGgA----CAGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 59183 0.66 0.952774
Target:  5'- uGCUGGAccccguggcGGU-CGACGCgcacGUCGGCGu -3'
miRNA:   3'- -CGACCU---------CUAuGCUGCGga--CAGCCGCu -5'
10948 5' -55.7 NC_002794.1 + 59279 0.66 0.950381
Target:  5'- uGCUGGAGAUccgcucgccgcuCGACGCCgcgcagcgccaCGGCGc -3'
miRNA:   3'- -CGACCUCUAu-----------GCUGCGGaca--------GCCGCu -5'
10948 5' -55.7 NC_002794.1 + 62055 0.67 0.919827
Target:  5'- cGgUGGccgacgccGGcgGCGACGCCgg-CGGCGAc -3'
miRNA:   3'- -CgACC--------UCuaUGCUGCGGacaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 79457 0.66 0.952774
Target:  5'- cGC-GGAGAcgACGACGCCgccaGUCGccacCGAg -3'
miRNA:   3'- -CGaCCUCUa-UGCUGCGGa---CAGCc---GCU- -5'
10948 5' -55.7 NC_002794.1 + 80184 0.67 0.935307
Target:  5'- cGUUGGGGuAUACcggcuACGCCUGggCGGuCGAc -3'
miRNA:   3'- -CGACCUC-UAUGc----UGCGGACa-GCC-GCU- -5'
10948 5' -55.7 NC_002794.1 + 84296 0.69 0.868679
Target:  5'- --gGGAGcgGCGGCGCUUccUGGCGAc -3'
miRNA:   3'- cgaCCUCuaUGCUGCGGAcaGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 86812 0.66 0.940011
Target:  5'- --gGGAGAUccagggccGCGAccuCGCCgggaucggGUCGGCGGc -3'
miRNA:   3'- cgaCCUCUA--------UGCU---GCGGa-------CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 86979 0.66 0.940011
Target:  5'- aGCUGcgacGAGGUcCGGCGgCUuUCGGCGGc -3'
miRNA:   3'- -CGAC----CUCUAuGCUGCgGAcAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 89509 0.66 0.940011
Target:  5'- gGCaGGAGAccGCGuAgGCCagaGUCGGCGGa -3'
miRNA:   3'- -CGaCCUCUa-UGC-UgCGGa--CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 92263 0.69 0.846037
Target:  5'- cGCUGGcGGcgGCGccgggcgaggcGCGCaagGUCGGCGAc -3'
miRNA:   3'- -CGACC-UCuaUGC-----------UGCGga-CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 94437 0.71 0.75961
Target:  5'- cCUGGAGGccUACGGCGCggaggaGUCGGUGGc -3'
miRNA:   3'- cGACCUCU--AUGCUGCGga----CAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 95816 0.67 0.930376
Target:  5'- --gGGAGcgGCGGCgGCCgggGgagCGGCGGc -3'
miRNA:   3'- cgaCCUCuaUGCUG-CGGa--Ca--GCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 96179 0.68 0.908367
Target:  5'- cCUGGuGcacCGGCGCCUGcCGGcCGAg -3'
miRNA:   3'- cGACCuCuauGCUGCGGACaGCC-GCU- -5'
10948 5' -55.7 NC_002794.1 + 98951 0.77 0.43187
Target:  5'- gGCUGGGGcucGUGCugGGCGCC-GUCGGCGGc -3'
miRNA:   3'- -CGACCUC---UAUG--CUGCGGaCAGCCGCU- -5'
10948 5' -55.7 NC_002794.1 + 100359 0.7 0.819211
Target:  5'- aGCUGGAGGUGgacugcgagguggcCGACGUCcG-CGGCGu -3'
miRNA:   3'- -CGACCUCUAU--------------GCUGCGGaCaGCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.