miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10949 3' -58.2 NC_002794.1 + 117371 0.66 0.895418
Target:  5'- cGGCGGGccgccuGCACGGUcgcGGCGaAGCggGCCu -3'
miRNA:   3'- -CCGCCUc-----UGUGCCAu--CCGCgUCG--UGG- -5'
10949 3' -58.2 NC_002794.1 + 108457 0.66 0.895418
Target:  5'- cGGCGGcccgccGGCACGGgccgAGGgGCG--ACCg -3'
miRNA:   3'- -CCGCCu-----CUGUGCCa---UCCgCGUcgUGG- -5'
10949 3' -58.2 NC_002794.1 + 55357 0.66 0.895418
Target:  5'- aGGCGGccGAgGCGGccgAGGCGgccgaGGCgGCCg -3'
miRNA:   3'- -CCGCCu-CUgUGCCa--UCCGCg----UCG-UGG- -5'
10949 3' -58.2 NC_002794.1 + 44813 0.66 0.895418
Target:  5'- -uCGGAGcuccuGCACGG-AGucGCGCAGCuCCg -3'
miRNA:   3'- ccGCCUC-----UGUGCCaUC--CGCGUCGuGG- -5'
10949 3' -58.2 NC_002794.1 + 38104 0.66 0.895418
Target:  5'- cGGCGuGaAGACGCGGgaga-GCcGCGCCa -3'
miRNA:   3'- -CCGC-C-UCUGUGCCauccgCGuCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 54244 0.66 0.895418
Target:  5'- cGGCcGAGcGCGCGGUccacGGCGCcGCgucggGCCa -3'
miRNA:   3'- -CCGcCUC-UGUGCCAu---CCGCGuCG-----UGG- -5'
10949 3' -58.2 NC_002794.1 + 113883 0.66 0.895418
Target:  5'- cGGCcGcGGCGCGcGUcGGCGCGGuCugCa -3'
miRNA:   3'- -CCGcCuCUGUGC-CAuCCGCGUC-GugG- -5'
10949 3' -58.2 NC_002794.1 + 71789 0.66 0.895418
Target:  5'- cGGCGaGucGCccccCGGcGGGCGCGGCgagGCCg -3'
miRNA:   3'- -CCGC-CucUGu---GCCaUCCGCGUCG---UGG- -5'
10949 3' -58.2 NC_002794.1 + 32583 0.66 0.888993
Target:  5'- cGGCGGugccgGGGC-CGGggccgGGGC-CGGgGCCg -3'
miRNA:   3'- -CCGCC-----UCUGuGCCa----UCCGcGUCgUGG- -5'
10949 3' -58.2 NC_002794.1 + 31123 0.66 0.888993
Target:  5'- uGGCGGAGuagaGCAgccCGGacagcaacgaaUAGGCGUAGaugGCCu -3'
miRNA:   3'- -CCGCCUC----UGU---GCC-----------AUCCGCGUCg--UGG- -5'
10949 3' -58.2 NC_002794.1 + 139631 0.66 0.888993
Target:  5'- cGGUGGcGAagccCACGGUGcagcuGGUGUAGUACa -3'
miRNA:   3'- -CCGCCuCU----GUGCCAU-----CCGCGUCGUGg -5'
10949 3' -58.2 NC_002794.1 + 37990 0.66 0.888993
Target:  5'- cGCGGucagccGGGcCACGccGUAGGCcuGCAGCGCUu -3'
miRNA:   3'- cCGCC------UCU-GUGC--CAUCCG--CGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 193821 0.66 0.888993
Target:  5'- uGGCGccGACGCGucgcGGCGCcGGCACUu -3'
miRNA:   3'- -CCGCcuCUGUGCcau-CCGCG-UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 79352 0.66 0.888338
Target:  5'- cGCGGcgcagagccugucGGACACGcuggacgAGGCGCAG-ACCc -3'
miRNA:   3'- cCGCC-------------UCUGUGCca-----UCCGCGUCgUGG- -5'
10949 3' -58.2 NC_002794.1 + 87282 0.66 0.882358
Target:  5'- gGGCGG-GugGgGGUGGGgaaGCGG-GCCu -3'
miRNA:   3'- -CCGCCuCugUgCCAUCCg--CGUCgUGG- -5'
10949 3' -58.2 NC_002794.1 + 112511 0.66 0.882358
Target:  5'- aGCGGu--CGCGGUGcuGGCGCAGgAgguCCa -3'
miRNA:   3'- cCGCCucuGUGCCAU--CCGCGUCgU---GG- -5'
10949 3' -58.2 NC_002794.1 + 120794 0.66 0.882358
Target:  5'- cGGCGaGGGugACGuuuuUGGaGCGgCAGCugCg -3'
miRNA:   3'- -CCGC-CUCugUGCc---AUC-CGC-GUCGugG- -5'
10949 3' -58.2 NC_002794.1 + 181063 0.66 0.882358
Target:  5'- -uCGGAGaACGCGGguccGGGCaGgGGCACg -3'
miRNA:   3'- ccGCCUC-UGUGCCa---UCCG-CgUCGUGg -5'
10949 3' -58.2 NC_002794.1 + 130150 0.66 0.882358
Target:  5'- cGGCGcGAG-CGCGGgaucacGCGCGcgagagccgccGCACCg -3'
miRNA:   3'- -CCGC-CUCuGUGCCauc---CGCGU-----------CGUGG- -5'
10949 3' -58.2 NC_002794.1 + 11263 0.66 0.882358
Target:  5'- gGGuCGGGcGACGCGGUcaccugguGGCGCGuccgcaaCACCa -3'
miRNA:   3'- -CC-GCCU-CUGUGCCAu-------CCGCGUc------GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.