miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10949 3' -58.2 NC_002794.1 + 21919 0.87 0.078477
Target:  5'- cGGCGGAGACgACGGcggcGGCGCGGCGCUc -3'
miRNA:   3'- -CCGCCUCUG-UGCCau--CCGCGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 142388 0.86 0.088971
Target:  5'- cGGCGGAGACgGCGGUgcAGGCggcgucgGCGGCGCCg -3'
miRNA:   3'- -CCGCCUCUG-UGCCA--UCCG-------CGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 34749 0.81 0.179361
Target:  5'- cGCGcGAcGGCGCGGUGGGaCGCGGCACg -3'
miRNA:   3'- cCGC-CU-CUGUGCCAUCC-GCGUCGUGg -5'
10949 3' -58.2 NC_002794.1 + 107878 0.81 0.192811
Target:  5'- cGCGGAGGCggcGCGGcGGGUGCGGCuGCCg -3'
miRNA:   3'- cCGCCUCUG---UGCCaUCCGCGUCG-UGG- -5'
10949 3' -58.2 NC_002794.1 + 107037 0.8 0.211611
Target:  5'- cGCuGGGGACccccgcgucggagGCGGcGGGCGCGGCGCCg -3'
miRNA:   3'- cCG-CCUCUG-------------UGCCaUCCGCGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 145377 0.8 0.227128
Target:  5'- gGGCGGAGACGCuccgcucGGUGGcGCGCcGCGCg -3'
miRNA:   3'- -CCGCCUCUGUG-------CCAUC-CGCGuCGUGg -5'
10949 3' -58.2 NC_002794.1 + 72342 0.79 0.255709
Target:  5'- cGGUGGAG-C-CGGU-GGCGCuGCACCg -3'
miRNA:   3'- -CCGCCUCuGuGCCAuCCGCGuCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 94059 0.79 0.255709
Target:  5'- uGCGGGGGCgGCGGgGGGCGagGGCACCu -3'
miRNA:   3'- cCGCCUCUG-UGCCaUCCGCg-UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 185183 0.78 0.267697
Target:  5'- cGCGGucGGCGCGGUcGGCGCGGuCAUCg -3'
miRNA:   3'- cCGCCu-CUGUGCCAuCCGCGUC-GUGG- -5'
10949 3' -58.2 NC_002794.1 + 141432 0.78 0.276357
Target:  5'- cGGCGGGGGCGcCGGgggcgccgggagcGGCGCGGCGuCCg -3'
miRNA:   3'- -CCGCCUCUGU-GCCau-----------CCGCGUCGU-GG- -5'
10949 3' -58.2 NC_002794.1 + 191877 0.78 0.299649
Target:  5'- cGGCGGAgGGgGCGGcggAGGCGggauCGGCACCg -3'
miRNA:   3'- -CCGCCU-CUgUGCCa--UCCGC----GUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 112715 0.77 0.312541
Target:  5'- cGCGGgucugcccguccaGGACGCGGaAGGCGCGGUGCUc -3'
miRNA:   3'- cCGCC-------------UCUGUGCCaUCCGCGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 142151 0.77 0.312541
Target:  5'- cGGCGGAGGCgGCGGUAgcaccGGCagcgucgGCAGCGCg -3'
miRNA:   3'- -CCGCCUCUG-UGCCAU-----CCG-------CGUCGUGg -5'
10949 3' -58.2 NC_002794.1 + 96908 0.77 0.333746
Target:  5'- gGGCGGAgGugGCGG-AGGCGCcggcgacAGCACg -3'
miRNA:   3'- -CCGCCU-CugUGCCaUCCGCG-------UCGUGg -5'
10949 3' -58.2 NC_002794.1 + 58072 0.77 0.334471
Target:  5'- cGGCGGcGGgACGGgcGGCcCGGCGCCc -3'
miRNA:   3'- -CCGCCuCUgUGCCauCCGcGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 140009 0.76 0.341781
Target:  5'- gGGUGGAGGcCGCGG-AGGCcGCGGCcCCc -3'
miRNA:   3'- -CCGCCUCU-GUGCCaUCCG-CGUCGuGG- -5'
10949 3' -58.2 NC_002794.1 + 142301 0.76 0.349206
Target:  5'- aGGCGGuacaGGugGCGG-AGGCGgCGGCGCa -3'
miRNA:   3'- -CCGCC----UCugUGCCaUCCGC-GUCGUGg -5'
10949 3' -58.2 NC_002794.1 + 116007 0.76 0.356745
Target:  5'- cGCGGAGAcCGCGGUGgcgauuGGCGCGGgGaCCg -3'
miRNA:   3'- cCGCCUCU-GUGCCAU------CCGCGUCgU-GG- -5'
10949 3' -58.2 NC_002794.1 + 112328 0.76 0.372163
Target:  5'- cGGCGGGGAgCGCGcc-GGCcgGCGGCGCCg -3'
miRNA:   3'- -CCGCCUCU-GUGCcauCCG--CGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 183599 0.76 0.372163
Target:  5'- gGGCGGAGgggggccgcGCGCGGccGGCGCccccGCGCCc -3'
miRNA:   3'- -CCGCCUC---------UGUGCCauCCGCGu---CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.