miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10949 3' -58.2 NC_002794.1 + 147135 0.66 0.882358
Target:  5'- cGGCGGuucGAgACGGccccgGGGCcGCgAGgGCCa -3'
miRNA:   3'- -CCGCCu--CUgUGCCa----UCCG-CG-UCgUGG- -5'
10949 3' -58.2 NC_002794.1 + 150449 0.66 0.880327
Target:  5'- gGGCGGgugcggaucccggaAGGCuccCGGUucuGGCucacgugcaccuGCGGCGCCg -3'
miRNA:   3'- -CCGCC--------------UCUGu--GCCAu--CCG------------CGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 154204 0.66 0.875517
Target:  5'- -cUGGAGACGCu---GGCGCGGCAa- -3'
miRNA:   3'- ccGCCUCUGUGccauCCGCGUCGUgg -5'
10949 3' -58.2 NC_002794.1 + 55193 0.66 0.875517
Target:  5'- cGGCGGcccuaacaccGGCGCGGcggAGGCcgGCGGUcgaGCCg -3'
miRNA:   3'- -CCGCCu---------CUGUGCCa--UCCG--CGUCG---UGG- -5'
10949 3' -58.2 NC_002794.1 + 14497 0.66 0.875517
Target:  5'- cGGCGGcGGCccGCGcucgcGGCGCucguGGCGCCg -3'
miRNA:   3'- -CCGCCuCUG--UGCcau--CCGCG----UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 107161 0.66 0.875517
Target:  5'- cGGCGaGGGccgccgcuACGCGGcGGaGC-CGGCGCCg -3'
miRNA:   3'- -CCGC-CUC--------UGUGCCaUC-CGcGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 49600 0.66 0.875517
Target:  5'- cGCGaucGGCgACGGcGGGCGCcggcGGCGCCu -3'
miRNA:   3'- cCGCcu-CUG-UGCCaUCCGCG----UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 143076 0.66 0.875517
Target:  5'- cGGCGGcAGACGuaGUGGagguuGCGCGGCGuguuCCa -3'
miRNA:   3'- -CCGCC-UCUGUgcCAUC-----CGCGUCGU----GG- -5'
10949 3' -58.2 NC_002794.1 + 56177 0.66 0.874822
Target:  5'- cGGUGcacguagagcaccGGGcCGCGGcAGGCGUAGgCGCCc -3'
miRNA:   3'- -CCGC-------------CUCuGUGCCaUCCGCGUC-GUGG- -5'
10949 3' -58.2 NC_002794.1 + 137675 0.66 0.874822
Target:  5'- uGCGGAcGCACGGUccaguugAGGCGgaaGGCcuCCg -3'
miRNA:   3'- cCGCCUcUGUGCCA-------UCCGCg--UCGu-GG- -5'
10949 3' -58.2 NC_002794.1 + 41017 0.66 0.871316
Target:  5'- uGGCGGAGACG----AGGCGCAcccucggcagguccuGgACCa -3'
miRNA:   3'- -CCGCCUCUGUgccaUCCGCGU---------------CgUGG- -5'
10949 3' -58.2 NC_002794.1 + 107225 0.66 0.868475
Target:  5'- gGGCGGcgcgcGACGgGGgcGGCGUcGCggACCu -3'
miRNA:   3'- -CCGCCu----CUGUgCCauCCGCGuCG--UGG- -5'
10949 3' -58.2 NC_002794.1 + 95842 0.66 0.868475
Target:  5'- cGGCGGcGGC-CGGggAGGCgGCGGgCggGCCg -3'
miRNA:   3'- -CCGCCuCUGuGCCa-UCCG-CGUC-G--UGG- -5'
10949 3' -58.2 NC_002794.1 + 140911 0.66 0.868475
Target:  5'- uGGCGG-GAC-CuGcAGGCGCGcugccugcGCACCa -3'
miRNA:   3'- -CCGCCuCUGuGcCaUCCGCGU--------CGUGG- -5'
10949 3' -58.2 NC_002794.1 + 159897 0.66 0.868475
Target:  5'- gGGCGGGGuaGCGaagGGUAGGUGgguCGGCuuACCu -3'
miRNA:   3'- -CCGCCUC--UGUg--CCAUCCGC---GUCG--UGG- -5'
10949 3' -58.2 NC_002794.1 + 110484 0.66 0.868475
Target:  5'- gGGUaGAGAgGCGGUG---GCGGCGCCu -3'
miRNA:   3'- -CCGcCUCUgUGCCAUccgCGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 83167 0.66 0.868475
Target:  5'- uGCGGAcGCucuCGGUcGaGCGCGGCuucGCCa -3'
miRNA:   3'- cCGCCUcUGu--GCCAuC-CGCGUCG---UGG- -5'
10949 3' -58.2 NC_002794.1 + 64832 0.66 0.868475
Target:  5'- cGGCGccGACGacCGGacGGCGCggcGGCACCu -3'
miRNA:   3'- -CCGCcuCUGU--GCCauCCGCG---UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 113747 0.66 0.868475
Target:  5'- -cCGGAccaGGCGCGcGaGGGUGuCGGCACCu -3'
miRNA:   3'- ccGCCU---CUGUGC-CaUCCGC-GUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 1388 0.66 0.868475
Target:  5'- --gGGGGACAauG-AGGCGguGaCACCg -3'
miRNA:   3'- ccgCCUCUGUgcCaUCCGCguC-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.