miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10949 3' -58.2 NC_002794.1 + 1388 0.66 0.868475
Target:  5'- --gGGGGACAauG-AGGCGguGaCACCg -3'
miRNA:   3'- ccgCCUCUGUgcCaUCCGCguC-GUGG- -5'
10949 3' -58.2 NC_002794.1 + 6493 0.69 0.75115
Target:  5'- aGGCcGAGAugacccuCGCGGUGGGUGgAGUccACCu -3'
miRNA:   3'- -CCGcCUCU-------GUGCCAUCCGCgUCG--UGG- -5'
10949 3' -58.2 NC_002794.1 + 8122 0.75 0.396126
Target:  5'- gGGCGGcGGCcuccuCGGUGaccGGCGaCGGCACCg -3'
miRNA:   3'- -CCGCCuCUGu----GCCAU---CCGC-GUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 8626 0.74 0.482723
Target:  5'- uGCGGAG-CGCGGUGGaagacGUGC-GCGCCa -3'
miRNA:   3'- cCGCCUCuGUGCCAUC-----CGCGuCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 11263 0.66 0.882358
Target:  5'- gGGuCGGGcGACGCGGUcaccugguGGCGCGuccgcaaCACCa -3'
miRNA:   3'- -CC-GCCU-CUGUGCCAu-------CCGCGUc------GUGG- -5'
10949 3' -58.2 NC_002794.1 + 12219 0.68 0.787342
Target:  5'- cGGCGGcgucggcGGCGCcGgcGGCGCcguccgcGGCGCCg -3'
miRNA:   3'- -CCGCCu------CUGUGcCauCCGCG-------UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 12545 0.67 0.838397
Target:  5'- cGCGGcGcGCACGGcuaccGGCGCAuCGCCa -3'
miRNA:   3'- cCGCCuC-UGUGCCau---CCGCGUcGUGG- -5'
10949 3' -58.2 NC_002794.1 + 14497 0.66 0.875517
Target:  5'- cGGCGGcGGCccGCGcucgcGGCGCucguGGCGCCg -3'
miRNA:   3'- -CCGCCuCUG--UGCcau--CCGCG----UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 14624 0.69 0.742774
Target:  5'- gGGcCGGAGACGgGGccGGGCacggagacGCcGGCGCCg -3'
miRNA:   3'- -CC-GCCUCUGUgCCa-UCCG--------CG-UCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 19505 0.73 0.519852
Target:  5'- cGGCGGAGGuCGCGccgcucggagcGccGGCGCGGCGCg -3'
miRNA:   3'- -CCGCCUCU-GUGC-----------CauCCGCGUCGUGg -5'
10949 3' -58.2 NC_002794.1 + 20411 0.69 0.758529
Target:  5'- aGCGGGGccACACGGUcuaccccgcgccggAGGaCGU-GCACCg -3'
miRNA:   3'- cCGCCUC--UGUGCCA--------------UCC-GCGuCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 21919 0.87 0.078477
Target:  5'- cGGCGGAGACgACGGcggcGGCGCGGCGCUc -3'
miRNA:   3'- -CCGCCUCUG-UGCCau--CCGCGUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 25131 0.74 0.437335
Target:  5'- aGCGGGGcacgcgcGCACGGUAGGC-CAGCgugauaggcaGCCa -3'
miRNA:   3'- cCGCCUC-------UGUGCCAUCCGcGUCG----------UGG- -5'
10949 3' -58.2 NC_002794.1 + 26653 0.72 0.567733
Target:  5'- cGGCGGccGGCucguCGGcgGGGUGgAGCGCCa -3'
miRNA:   3'- -CCGCCu-CUGu---GCCa-UCCGCgUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 31052 0.68 0.787342
Target:  5'- gGGCaGcGGCACGGcGGccagcucGCGCAGCACg -3'
miRNA:   3'- -CCGcCuCUGUGCCaUC-------CGCGUCGUGg -5'
10949 3' -58.2 NC_002794.1 + 31123 0.66 0.888993
Target:  5'- uGGCGGAGuagaGCAgccCGGacagcaacgaaUAGGCGUAGaugGCCu -3'
miRNA:   3'- -CCGCCUC----UGU---GCC-----------AUCCGCGUCg--UGG- -5'
10949 3' -58.2 NC_002794.1 + 32583 0.66 0.888993
Target:  5'- cGGCGGugccgGGGC-CGGggccgGGGC-CGGgGCCg -3'
miRNA:   3'- -CCGCC-----UCUGuGCCa----UCCGcGUCgUGG- -5'
10949 3' -58.2 NC_002794.1 + 32641 0.68 0.788223
Target:  5'- --gGGGGGCgACGaccgGGGCGaCGGCGCCg -3'
miRNA:   3'- ccgCCUCUG-UGCca--UCCGC-GUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 32871 0.72 0.548418
Target:  5'- cGGCGGGcGGCgGCGGc-GGCGgCGGCAUCa -3'
miRNA:   3'- -CCGCCU-CUG-UGCCauCCGC-GUCGUGG- -5'
10949 3' -58.2 NC_002794.1 + 34264 0.72 0.587216
Target:  5'- aGGCGGAccgcGCGCaGgcGGC-CAGCGCCa -3'
miRNA:   3'- -CCGCCUc---UGUGcCauCCGcGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.