miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10949 5' -52.8 NC_002794.1 + 182944 0.66 0.991087
Target:  5'- cCGGcGCcggGCUCGAGCcgACGGCGgccggCUCc -3'
miRNA:   3'- cGCUaUGa--CGAGCUCG--UGCUGCa----GAG- -5'
10949 5' -52.8 NC_002794.1 + 43362 0.66 0.991087
Target:  5'- uGCGGcucggacagGCUGUagucgcaGAGCACGGCGUgCUCc -3'
miRNA:   3'- -CGCUa--------UGACGag-----CUCGUGCUGCA-GAG- -5'
10949 5' -52.8 NC_002794.1 + 78140 0.66 0.98849
Target:  5'- cGCGAgcgcucgagACgccGCUCGAGCcGCGAgCG-CUCg -3'
miRNA:   3'- -CGCUa--------UGa--CGAGCUCG-UGCU-GCaGAG- -5'
10949 5' -52.8 NC_002794.1 + 145592 0.66 0.98849
Target:  5'- gGCGGccgGCUcccGCggagUCGGGCGCGACGaggagCUCg -3'
miRNA:   3'- -CGCUa--UGA---CG----AGCUCGUGCUGCa----GAG- -5'
10949 5' -52.8 NC_002794.1 + 143162 0.66 0.98849
Target:  5'- cGCGGUGaaGCgccaGAGCuuGCGGCGguUCUCg -3'
miRNA:   3'- -CGCUAUgaCGag--CUCG--UGCUGC--AGAG- -5'
10949 5' -52.8 NC_002794.1 + 99576 0.66 0.98849
Target:  5'- gGCGAggggGgUGCggaGGGCGCGGCGgcggcgcgcgCUCg -3'
miRNA:   3'- -CGCUa---UgACGag-CUCGUGCUGCa---------GAG- -5'
10949 5' -52.8 NC_002794.1 + 59244 0.66 0.98849
Target:  5'- cGCGcUGCUGCccuacgucggCGAGCACGcGCGcCUg -3'
miRNA:   3'- -CGCuAUGACGa---------GCUCGUGC-UGCaGAg -5'
10949 5' -52.8 NC_002794.1 + 186998 0.66 0.98849
Target:  5'- cGCcg-GCUGCgUCGucaGGUACGGCGUCa- -3'
miRNA:   3'- -CGcuaUGACG-AGC---UCGUGCUGCAGag -5'
10949 5' -52.8 NC_002794.1 + 59175 0.66 0.987606
Target:  5'- gGCGcaGCUGCuggaccccguggcggUCGAcgcGCACGucgGCGUCUCg -3'
miRNA:   3'- -CGCuaUGACG---------------AGCU---CGUGC---UGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 57702 0.66 0.986989
Target:  5'- gGCGAgaagaacgugGC-GCUCGAGCACcugcggcGCGUCUa -3'
miRNA:   3'- -CGCUa---------UGaCGAGCUCGUGc------UGCAGAg -5'
10949 5' -52.8 NC_002794.1 + 90398 0.66 0.985341
Target:  5'- cGCGAUcggGCUGCacgUGAGCAuCGGcCGUCcCg -3'
miRNA:   3'- -CGCUA---UGACGa--GCUCGU-GCU-GCAGaG- -5'
10949 5' -52.8 NC_002794.1 + 152799 0.66 0.985168
Target:  5'- cGCGAgcUGCUGCUCccgaucgGGGUgccgugcggacACGGCGUCa- -3'
miRNA:   3'- -CGCU--AUGACGAG-------CUCG-----------UGCUGCAGag -5'
10949 5' -52.8 NC_002794.1 + 57423 0.67 0.983539
Target:  5'- gGCG-UGCUGgUCG-GCACGGCGcCcgUCa -3'
miRNA:   3'- -CGCuAUGACgAGCuCGUGCUGCaG--AG- -5'
10949 5' -52.8 NC_002794.1 + 31528 0.67 0.979438
Target:  5'- cCGGU--UGCgcggCGAGCccCGACGUCUCc -3'
miRNA:   3'- cGCUAugACGa---GCUCGu-GCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 126497 0.67 0.979214
Target:  5'- ----gGCUGCgCGAuucagaaccacguGCACGACGUCUUc -3'
miRNA:   3'- cgcuaUGACGaGCU-------------CGUGCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 86441 0.67 0.974622
Target:  5'- -gGAUGCUccgGCUCGAGCcCGAcCGgaugCUCc -3'
miRNA:   3'- cgCUAUGA---CGAGCUCGuGCU-GCa---GAG- -5'
10949 5' -52.8 NC_002794.1 + 86249 0.67 0.974622
Target:  5'- -gGAUGCUccgGCUCGAGCcCGAcCGgaugCUCc -3'
miRNA:   3'- cgCUAUGA---CGAGCUCGuGCU-GCa---GAG- -5'
10949 5' -52.8 NC_002794.1 + 86609 0.67 0.974622
Target:  5'- -gGAUGCUccgGCUCGAGCcCGAcCGgaugCUCc -3'
miRNA:   3'- cgCUAUGA---CGAGCUCGuGCU-GCa---GAG- -5'
10949 5' -52.8 NC_002794.1 + 60022 0.68 0.965934
Target:  5'- cCGAc-CUGCUCGAcGCcgACGcCGUCUCg -3'
miRNA:   3'- cGCUauGACGAGCU-CG--UGCuGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 116076 0.68 0.965934
Target:  5'- cGCGGaGC-GCUCG-GCGCGGCGgUCgUCg -3'
miRNA:   3'- -CGCUaUGaCGAGCuCGUGCUGC-AG-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.