miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10949 5' -52.8 NC_002794.1 + 104904 0.85 0.246858
Target:  5'- gGCGccGUGCUGCUCGAGCAgGcgccGCGUCUCu -3'
miRNA:   3'- -CGC--UAUGACGAGCUCGUgC----UGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 121897 0.78 0.518415
Target:  5'- uGCGGUACUGCgUCGA-CugGACGUCg- -3'
miRNA:   3'- -CGCUAUGACG-AGCUcGugCUGCAGag -5'
10949 5' -52.8 NC_002794.1 + 189046 0.78 0.528249
Target:  5'- aGCGGcggGCUGCgcgUCGcGUACGGCGUCUCg -3'
miRNA:   3'- -CGCUa--UGACG---AGCuCGUGCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 65948 0.76 0.629366
Target:  5'- gGCGGUAUcGUcgCGAGCgGCGGCGUCUCc -3'
miRNA:   3'- -CGCUAUGaCGa-GCUCG-UGCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 58698 0.75 0.704668
Target:  5'- ----aGCUGCUCGGGCugGugcgcuuccugcaccGCGUCUCg -3'
miRNA:   3'- cgcuaUGACGAGCUCGugC---------------UGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 194824 0.74 0.740307
Target:  5'- aGCGAcGCgcGCUCGcGGCcCGGCGUCUCc -3'
miRNA:   3'- -CGCUaUGa-CGAGC-UCGuGCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 146650 0.73 0.775656
Target:  5'- gGCGAcgaacacgagccguUGCUGgaCGAGgAgGACGUCUCg -3'
miRNA:   3'- -CGCU--------------AUGACgaGCUCgUgCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 178529 0.72 0.831558
Target:  5'- aGCGGUccgcuaggucccGCUGCcgaUCGGGCACcACGUCUUc -3'
miRNA:   3'- -CGCUA------------UGACG---AGCUCGUGcUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 128889 0.72 0.83982
Target:  5'- cGCuGUACggaGCUCGAGCGCucCGUCUUu -3'
miRNA:   3'- -CGcUAUGa--CGAGCUCGUGcuGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 44354 0.72 0.83982
Target:  5'- gGCGAgaccgAgaGCgcggCGGGCGCGACGUC-Cg -3'
miRNA:   3'- -CGCUa----UgaCGa---GCUCGUGCUGCAGaG- -5'
10949 5' -52.8 NC_002794.1 + 187680 0.71 0.898577
Target:  5'- gGCGAUGCgGgUCGAGCGgcccguUGGcCGUCUCc -3'
miRNA:   3'- -CGCUAUGaCgAGCUCGU------GCU-GCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 110137 0.71 0.898577
Target:  5'- uGCGggACUGCggagagagggUGAGCACGuCGUCg- -3'
miRNA:   3'- -CGCuaUGACGa---------GCUCGUGCuGCAGag -5'
10949 5' -52.8 NC_002794.1 + 94293 0.7 0.903044
Target:  5'- aGCGGgggGCgGCUCGGGCGCGcCGaugcaaggacugcaUCUCu -3'
miRNA:   3'- -CGCUa--UGaCGAGCUCGUGCuGC--------------AGAG- -5'
10949 5' -52.8 NC_002794.1 + 31958 0.7 0.904924
Target:  5'- uGCGu--CUGgUUGucGUACGACGUCUCg -3'
miRNA:   3'- -CGCuauGACgAGCu-CGUGCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 134451 0.7 0.904924
Target:  5'- uGCGGUGCgUGCcccuUCGGG-ACGGCGcUCUCg -3'
miRNA:   3'- -CGCUAUG-ACG----AGCUCgUGCUGC-AGAG- -5'
10949 5' -52.8 NC_002794.1 + 67211 0.7 0.91691
Target:  5'- gGCGGUGC-GCUCG-GCGcCGggcggcuaaccGCGUCUCg -3'
miRNA:   3'- -CGCUAUGaCGAGCuCGU-GC-----------UGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 40642 0.7 0.91691
Target:  5'- cGCGA-GCUGagCGGGCAgCGACGUaCUCg -3'
miRNA:   3'- -CGCUaUGACgaGCUCGU-GCUGCA-GAG- -5'
10949 5' -52.8 NC_002794.1 + 14523 0.7 0.927944
Target:  5'- cGUGGcGCcGCUCGGcCACGGCGcUCUCg -3'
miRNA:   3'- -CGCUaUGaCGAGCUcGUGCUGC-AGAG- -5'
10949 5' -52.8 NC_002794.1 + 61893 0.69 0.933102
Target:  5'- cGCGcgGCgaGCgcggCGAGCgcaGCGACGUCgUCa -3'
miRNA:   3'- -CGCuaUGa-CGa---GCUCG---UGCUGCAG-AG- -5'
10949 5' -52.8 NC_002794.1 + 150213 0.69 0.947146
Target:  5'- aGCGGcUGCUGC-CGAGCugcguGCGACGgcagCUg -3'
miRNA:   3'- -CGCU-AUGACGaGCUCG-----UGCUGCa---GAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.