miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10949 5' -52.8 NC_002794.1 + 14523 0.7 0.927944
Target:  5'- cGUGGcGCcGCUCGGcCACGGCGcUCUCg -3'
miRNA:   3'- -CGCUaUGaCGAGCUcGUGCUGC-AGAG- -5'
10949 5' -52.8 NC_002794.1 + 31528 0.67 0.979438
Target:  5'- cCGGU--UGCgcggCGAGCccCGACGUCUCc -3'
miRNA:   3'- cGCUAugACGa---GCUCGu-GCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 31958 0.7 0.904924
Target:  5'- uGCGu--CUGgUUGucGUACGACGUCUCg -3'
miRNA:   3'- -CGCuauGACgAGCu-CGUGCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 40642 0.7 0.91691
Target:  5'- cGCGA-GCUGagCGGGCAgCGACGUaCUCg -3'
miRNA:   3'- -CGCUaUGACgaGCUCGU-GCUGCA-GAG- -5'
10949 5' -52.8 NC_002794.1 + 43362 0.66 0.991087
Target:  5'- uGCGGcucggacagGCUGUagucgcaGAGCACGGCGUgCUCc -3'
miRNA:   3'- -CGCUa--------UGACGag-----CUCGUGCUGCA-GAG- -5'
10949 5' -52.8 NC_002794.1 + 44354 0.72 0.83982
Target:  5'- gGCGAgaccgAgaGCgcggCGGGCGCGACGUC-Cg -3'
miRNA:   3'- -CGCUa----UgaCGa---GCUCGUGCUGCAGaG- -5'
10949 5' -52.8 NC_002794.1 + 57423 0.67 0.983539
Target:  5'- gGCG-UGCUGgUCG-GCACGGCGcCcgUCa -3'
miRNA:   3'- -CGCuAUGACgAGCuCGUGCUGCaG--AG- -5'
10949 5' -52.8 NC_002794.1 + 57702 0.66 0.986989
Target:  5'- gGCGAgaagaacgugGC-GCUCGAGCACcugcggcGCGUCUa -3'
miRNA:   3'- -CGCUa---------UGaCGAGCUCGUGc------UGCAGAg -5'
10949 5' -52.8 NC_002794.1 + 58698 0.75 0.704668
Target:  5'- ----aGCUGCUCGGGCugGugcgcuuccugcaccGCGUCUCg -3'
miRNA:   3'- cgcuaUGACGAGCUCGugC---------------UGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 59175 0.66 0.987606
Target:  5'- gGCGcaGCUGCuggaccccguggcggUCGAcgcGCACGucgGCGUCUCg -3'
miRNA:   3'- -CGCuaUGACG---------------AGCU---CGUGC---UGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 59244 0.66 0.98849
Target:  5'- cGCGcUGCUGCccuacgucggCGAGCACGcGCGcCUg -3'
miRNA:   3'- -CGCuAUGACGa---------GCUCGUGC-UGCaGAg -5'
10949 5' -52.8 NC_002794.1 + 60022 0.68 0.965934
Target:  5'- cCGAc-CUGCUCGAcGCcgACGcCGUCUCg -3'
miRNA:   3'- cGCUauGACGAGCU-CG--UGCuGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 61893 0.69 0.933102
Target:  5'- cGCGcgGCgaGCgcggCGAGCgcaGCGACGUCgUCa -3'
miRNA:   3'- -CGCuaUGa-CGa---GCUCG---UGCUGCAG-AG- -5'
10949 5' -52.8 NC_002794.1 + 65948 0.76 0.629366
Target:  5'- gGCGGUAUcGUcgCGAGCgGCGGCGUCUCc -3'
miRNA:   3'- -CGCUAUGaCGa-GCUCG-UGCUGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 67211 0.7 0.91691
Target:  5'- gGCGGUGC-GCUCG-GCGcCGggcggcuaaccGCGUCUCg -3'
miRNA:   3'- -CGCUAUGaCGAGCuCGU-GC-----------UGCAGAG- -5'
10949 5' -52.8 NC_002794.1 + 78140 0.66 0.98849
Target:  5'- cGCGAgcgcucgagACgccGCUCGAGCcGCGAgCG-CUCg -3'
miRNA:   3'- -CGCUa--------UGa--CGAGCUCG-UGCU-GCaGAG- -5'
10949 5' -52.8 NC_002794.1 + 81530 0.68 0.962621
Target:  5'- uGCGAcACgcGCUCGAGCGCugGACGgCUg -3'
miRNA:   3'- -CGCUaUGa-CGAGCUCGUG--CUGCaGAg -5'
10949 5' -52.8 NC_002794.1 + 86249 0.67 0.974622
Target:  5'- -gGAUGCUccgGCUCGAGCcCGAcCGgaugCUCc -3'
miRNA:   3'- cgCUAUGA---CGAGCUCGuGCU-GCa---GAG- -5'
10949 5' -52.8 NC_002794.1 + 86441 0.67 0.974622
Target:  5'- -gGAUGCUccgGCUCGAGCcCGAcCGgaugCUCc -3'
miRNA:   3'- cgCUAUGA---CGAGCUCGuGCU-GCa---GAG- -5'
10949 5' -52.8 NC_002794.1 + 86609 0.67 0.974622
Target:  5'- -gGAUGCUccgGCUCGAGCcCGAcCGgaugCUCc -3'
miRNA:   3'- cgCUAUGA---CGAGCUCGuGCU-GCa---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.