Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1095 | 3' | -50.9 | NC_000929.1 | + | 8556 | 0.73 | 0.44766 |
Target: 5'- aCGGCGGAcaGGGCGUuUCCACacuggCGUGGUg -3' miRNA: 3'- -GCUGCCUa-UUCGUAuAGGUG-----GCACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 8786 | 0.7 | 0.637561 |
Target: 5'- --cUGGcAUGGGCAUAgCCGCCGUcauGGCa -3' miRNA: 3'- gcuGCC-UAUUCGUAUaGGUGGCA---CCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 11647 | 0.69 | 0.706656 |
Target: 5'- aGGCGGGU---CAUAcgCCGCCG-GGCg -3' miRNA: 3'- gCUGCCUAuucGUAUa-GGUGGCaCCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 14366 | 0.68 | 0.762115 |
Target: 5'- cCGACGacauGGCGacUuuGCCGUGGCg -3' miRNA: 3'- -GCUGCcuauUCGUauAggUGGCACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 14437 | 0.67 | 0.777052 |
Target: 5'- uCGACGaGGacAGCAUacaggcgcugccaccAcgCCACCGUGGUg -3' miRNA: 3'- -GCUGC-CUauUCGUA---------------Ua-GGUGGCACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 15857 | 0.7 | 0.602772 |
Target: 5'- uCGAcCGGAUGGGC--GUCuCACCGgaagacUGGCa -3' miRNA: 3'- -GCU-GCCUAUUCGuaUAG-GUGGC------ACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 17092 | 0.69 | 0.68381 |
Target: 5'- aGACGGGcuGGCAUAUUC-CCgGUGcGCu -3' miRNA: 3'- gCUGCCUauUCGUAUAGGuGG-CAC-CG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 18510 | 0.72 | 0.500936 |
Target: 5'- aGGCGGAUuuGCAgcaCCGCaccgGUGGCg -3' miRNA: 3'- gCUGCCUAuuCGUauaGGUGg---CACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 20586 | 0.71 | 0.590063 |
Target: 5'- -aGCGGAcGGGCAg--CCggaugauGCCGUGGCa -3' miRNA: 3'- gcUGCCUaUUCGUauaGG-------UGGCACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 20615 | 0.71 | 0.55796 |
Target: 5'- gGGCGGGUGAGaAUAUCCAgCCGcguacguguauagcgGGCg -3' miRNA: 3'- gCUGCCUAUUCgUAUAGGU-GGCa--------------CCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 21809 | 0.66 | 0.860353 |
Target: 5'- uGACGGG-GAGCcgGuguUCCGCUGacGGCa -3' miRNA: 3'- gCUGCCUaUUCGuaU---AGGUGGCa-CCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 22206 | 0.68 | 0.751266 |
Target: 5'- -uACGGGU--GCAuUAUCUGCCGUGGa -3' miRNA: 3'- gcUGCCUAuuCGU-AUAGGUGGCACCg -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 29320 | 1.13 | 0.000921 |
Target: 5'- uCGACGGAUAAGCAUAUCCACCGUGGCg -3' miRNA: 3'- -GCUGCCUAUUCGUAUAGGUGGCACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 29676 | 0.76 | 0.325563 |
Target: 5'- uGGCGcGUuccAGCGUAUCCGgCGUGGCu -3' miRNA: 3'- gCUGCcUAu--UCGUAUAGGUgGCACCG- -5' |
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1095 | 3' | -50.9 | NC_000929.1 | + | 31088 | 0.67 | 0.813875 |
Target: 5'- gGACGGGaAacgcucccgcAGCAUuugccgcgcaucAUCCGCCGcagUGGCa -3' miRNA: 3'- gCUGCCUaU----------UCGUA------------UAGGUGGC---ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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