miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10950 3' -59.1 NC_002794.1 + 45463 0.66 0.852885
Target:  5'- cAGCGGGCccagggucccGAGCUCGgccuccgccguccacUCGUagcCCAGAUa -3'
miRNA:   3'- uUCGCCCG----------CUCGAGC---------------AGCA---GGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 157004 0.66 0.850608
Target:  5'- uAGCGGGCccgcGGccagccggcuuauucGCUCGUUGUCUuucagaguccggcgAGACCg -3'
miRNA:   3'- uUCGCCCG----CU---------------CGAGCAGCAGG--------------UCUGG- -5'
10950 3' -59.1 NC_002794.1 + 37768 0.66 0.849845
Target:  5'- cGGCGGGagcGGC-CGUCGUCgucGGCCg -3'
miRNA:   3'- uUCGCCCgc-UCGaGCAGCAGgu-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 23922 0.66 0.849845
Target:  5'- -cGUGGGCGAGCgagCGaUCcgagCCcGGCCg -3'
miRNA:   3'- uuCGCCCGCUCGa--GC-AGca--GGuCUGG- -5'
10950 3' -59.1 NC_002794.1 + 171125 0.66 0.849845
Target:  5'- cGAGgGGGCGAGgaCGa--UCCGGugCa -3'
miRNA:   3'- -UUCgCCCGCUCgaGCagcAGGUCugG- -5'
10950 3' -59.1 NC_002794.1 + 177774 0.66 0.849845
Target:  5'- cAAGCGGGCGuauGGCgggcCGUCauccUCCAGAa- -3'
miRNA:   3'- -UUCGCCCGC---UCGa---GCAGc---AGGUCUgg -5'
10950 3' -59.1 NC_002794.1 + 191682 0.66 0.849845
Target:  5'- cGGCGGcgGCGuGC-CcUCGUCgCGGACCa -3'
miRNA:   3'- uUCGCC--CGCuCGaGcAGCAG-GUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 56515 0.66 0.842118
Target:  5'- -cGCGGGCGcuccggcGCUCGU--UCCGGucGCCa -3'
miRNA:   3'- uuCGCCCGCu------CGAGCAgcAGGUC--UGG- -5'
10950 3' -59.1 NC_002794.1 + 71807 0.66 0.842118
Target:  5'- cGGGCGcGGCGAGgccgcCUCGUCGcgaGGAUCg -3'
miRNA:   3'- -UUCGC-CCGCUC-----GAGCAGCaggUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 119513 0.66 0.842118
Target:  5'- cGGCGGcGCgGAGC-CGgccgcggaccccUCGUCCGcGGCCg -3'
miRNA:   3'- uUCGCC-CG-CUCGaGC------------AGCAGGU-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 90376 0.66 0.834215
Target:  5'- -uGCaGGGcCGGGuCUCGcCGUCCGcGAUCg -3'
miRNA:   3'- uuCG-CCC-GCUC-GAGCaGCAGGU-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 143758 0.66 0.834215
Target:  5'- cGGgGGGCuccGCUCGUCGUCgGuGugCu -3'
miRNA:   3'- uUCgCCCGcu-CGAGCAGCAGgU-CugG- -5'
10950 3' -59.1 NC_002794.1 + 94231 0.66 0.834215
Target:  5'- cGGGCGGGCGGGC-CGguga-CGGACa -3'
miRNA:   3'- -UUCGCCCGCUCGaGCagcagGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 66017 0.66 0.834215
Target:  5'- gAGGCGGccGCGGucgucGC-CGUCGUCguCGGGCCg -3'
miRNA:   3'- -UUCGCC--CGCU-----CGaGCAGCAG--GUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 119986 0.66 0.82614
Target:  5'- cGAGCGGaGcCGcAGCUCuUCGaCCAGGCg -3'
miRNA:   3'- -UUCGCC-C-GC-UCGAGcAGCaGGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 189048 0.66 0.82614
Target:  5'- cGGCGGGCuGcGCgucgCGUacggCGUCuCGGGCCg -3'
miRNA:   3'- uUCGCCCG-CuCGa---GCA----GCAG-GUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 118298 0.66 0.82614
Target:  5'- -cGcCGGGCGcgucGCUCGUCGUCgucgucgcgaCGGGCg -3'
miRNA:   3'- uuC-GCCCGCu---CGAGCAGCAG----------GUCUGg -5'
10950 3' -59.1 NC_002794.1 + 180826 0.66 0.82614
Target:  5'- uGGGCGGGgagGAGCccggcgucacCGUCGUCUAcGGCCu -3'
miRNA:   3'- -UUCGCCCg--CUCGa---------GCAGCAGGU-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 26185 0.66 0.824505
Target:  5'- -cGCGGGagcggugacgauuuuUGAucagcacacccucacGCUCGUCGUCCGaGCCg -3'
miRNA:   3'- uuCGCCC---------------GCU---------------CGAGCAGCAGGUcUGG- -5'
10950 3' -59.1 NC_002794.1 + 106229 0.66 0.817902
Target:  5'- -cGCGGcCGcGCUCGg-GUCgCAGACCg -3'
miRNA:   3'- uuCGCCcGCuCGAGCagCAG-GUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.