miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10950 3' -59.1 NC_002794.1 + 76793 0.77 0.263661
Target:  5'- cGGGCGGGCGAGCggCGaCcaCCGGACCg -3'
miRNA:   3'- -UUCGCCCGCUCGa-GCaGcaGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 111729 0.77 0.263661
Target:  5'- cGAGCGGGCGAacgcGCUCGUCGagCUGGcGCCg -3'
miRNA:   3'- -UUCGCCCGCU----CGAGCAGCa-GGUC-UGG- -5'
10950 3' -59.1 NC_002794.1 + 115055 0.76 0.308763
Target:  5'- cGGCGGGCG-GCagCGcCGUCCAGuCCa -3'
miRNA:   3'- uUCGCCCGCuCGa-GCaGCAGGUCuGG- -5'
10950 3' -59.1 NC_002794.1 + 92335 0.75 0.34444
Target:  5'- cGGGCGGGCG-GCUCGgCGUCaacgucGACCg -3'
miRNA:   3'- -UUCGCCCGCuCGAGCaGCAGgu----CUGG- -5'
10950 3' -59.1 NC_002794.1 + 21551 0.74 0.372692
Target:  5'- gGAGCGGGgaaaaaguccuccuCGGGUUCGUCGUgCGcGACCg -3'
miRNA:   3'- -UUCGCCC--------------GCUCGAGCAGCAgGU-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 145326 0.74 0.40745
Target:  5'- cGGCGGGCGGcGCUCGggccCGagCGGGCCc -3'
miRNA:   3'- uUCGCCCGCU-CGAGCa---GCagGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 181543 0.74 0.41582
Target:  5'- cGGCGGGcCGGcGCUCucgGUCG-CCGGGCCa -3'
miRNA:   3'- uUCGCCC-GCU-CGAG---CAGCaGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 131730 0.74 0.41582
Target:  5'- cGAGCGGGCGAGaucgcgcucgcCUCGcgacCGUCCGGAUUu -3'
miRNA:   3'- -UUCGCCCGCUC-----------GAGCa---GCAGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 117759 0.73 0.424294
Target:  5'- -cGUGGuGCGcAGCagGUCGUCCAGcACCg -3'
miRNA:   3'- uuCGCC-CGC-UCGagCAGCAGGUC-UGG- -5'
10950 3' -59.1 NC_002794.1 + 44175 0.73 0.424294
Target:  5'- cGAGC-GGCG-GCUCGUCGacUCCGGGCg -3'
miRNA:   3'- -UUCGcCCGCuCGAGCAGC--AGGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 21934 0.73 0.45919
Target:  5'- cGGCGGcGCGGcGCUCGUCGaaggCCGucGGCCg -3'
miRNA:   3'- uUCGCC-CGCU-CGAGCAGCa---GGU--CUGG- -5'
10950 3' -59.1 NC_002794.1 + 186875 0.72 0.477201
Target:  5'- cAGCGGGCucGGCUCGcgguccggCGUCCgcaGGACCa -3'
miRNA:   3'- uUCGCCCGc-UCGAGCa-------GCAGG---UCUGG- -5'
10950 3' -59.1 NC_002794.1 + 44364 0.72 0.486337
Target:  5'- aGAGCGcGGCGGGCgCGaCGUCCGcGACg -3'
miRNA:   3'- -UUCGC-CCGCUCGaGCaGCAGGU-CUGg -5'
10950 3' -59.1 NC_002794.1 + 122450 0.72 0.514223
Target:  5'- cGAGCGGcuGCuGGGCUCGgugaacgcgcUCGcCCAGGCCg -3'
miRNA:   3'- -UUCGCC--CG-CUCGAGC----------AGCaGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 10646 0.72 0.514223
Target:  5'- gGAGCGGcGCGAGCcCGacgagCGUCUGGAgCCg -3'
miRNA:   3'- -UUCGCC-CGCUCGaGCa----GCAGGUCU-GG- -5'
10950 3' -59.1 NC_002794.1 + 82042 0.72 0.523664
Target:  5'- -cGUGGGCGgcggcGGCggcggCGUCGUCCucGGCCu -3'
miRNA:   3'- uuCGCCCGC-----UCGa----GCAGCAGGu-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 154349 0.72 0.523664
Target:  5'- -cGCGGcCGAGCUCccgcgCgGUCCAGGCCg -3'
miRNA:   3'- uuCGCCcGCUCGAGca---G-CAGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 80331 0.71 0.552361
Target:  5'- uGAGCGGGCuccuGAGCcucugcgCGUCcaauaagcgcGUCCGGGCCc -3'
miRNA:   3'- -UUCGCCCG----CUCGa------GCAG----------CAGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 195129 0.71 0.552361
Target:  5'- cGGCGcGcGCGGGCUCG-CGUacaccaCCGGACCc -3'
miRNA:   3'- uUCGC-C-CGCUCGAGCaGCA------GGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 114580 0.71 0.562036
Target:  5'- cAGCGGaGgGuGCUCGUCGcUCUGGACg -3'
miRNA:   3'- uUCGCC-CgCuCGAGCAGC-AGGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.