miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10950 3' -59.1 NC_002794.1 + 62436 0.66 0.815399
Target:  5'- cGAGCGuccucgacacgcacGGCGAGUUCGUCcUCCucgAGGCg -3'
miRNA:   3'- -UUCGC--------------CCGCUCGAGCAGcAGG---UCUGg -5'
10950 3' -59.1 NC_002794.1 + 125863 0.67 0.809506
Target:  5'- cAAGCGGGCcgugugggaGAGCugccUCGUCugguUCCuGGCCg -3'
miRNA:   3'- -UUCGCCCG---------CUCG----AGCAGc---AGGuCUGG- -5'
10950 3' -59.1 NC_002794.1 + 102677 0.67 0.809506
Target:  5'- -cGUGGGCGAcCgggUGUCGUacgugcugacggCCGGGCCg -3'
miRNA:   3'- uuCGCCCGCUcGa--GCAGCA------------GGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 103982 0.67 0.809506
Target:  5'- -uGCGGGCGAGCuUCGcCG-CgAaGCCg -3'
miRNA:   3'- uuCGCCCGCUCG-AGCaGCaGgUcUGG- -5'
10950 3' -59.1 NC_002794.1 + 112667 0.67 0.809506
Target:  5'- -cGCaGGCGGcGUUCGUC-UCCAGcuGCCg -3'
miRNA:   3'- uuCGcCCGCU-CGAGCAGcAGGUC--UGG- -5'
10950 3' -59.1 NC_002794.1 + 113793 0.67 0.809506
Target:  5'- -cGCGGGCGcGCUC-UCgGUCCucGCCu -3'
miRNA:   3'- uuCGCCCGCuCGAGcAG-CAGGucUGG- -5'
10950 3' -59.1 NC_002794.1 + 184773 0.67 0.809506
Target:  5'- cAGCGccGGCucGCUCGUCGacaccgucaacUCCGGGCUc -3'
miRNA:   3'- uUCGC--CCGcuCGAGCAGC-----------AGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 111643 0.67 0.806106
Target:  5'- cGGuCGGGCGccgcGGCcgcggccacgcccgUCGgauacggUCGUCCAGGCCg -3'
miRNA:   3'- uUC-GCCCGC----UCG--------------AGC-------AGCAGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 129257 0.67 0.800961
Target:  5'- --uCGGGuCGAGCgccUCGUCGUgagCGGGCCg -3'
miRNA:   3'- uucGCCC-GCUCG---AGCAGCAg--GUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 142960 0.67 0.800961
Target:  5'- cGGCGGcGuCGAGCUCcUCGUCgagGGGCUg -3'
miRNA:   3'- uUCGCC-C-GCUCGAGcAGCAGg--UCUGG- -5'
10950 3' -59.1 NC_002794.1 + 138114 0.67 0.783453
Target:  5'- cAGGaGGGCGugguGCUCGUCG-CCGGuCUc -3'
miRNA:   3'- -UUCgCCCGCu---CGAGCAGCaGGUCuGG- -5'
10950 3' -59.1 NC_002794.1 + 183209 0.67 0.783453
Target:  5'- cGGC-GGCGcGUUCGUCG-CCAgcGACCa -3'
miRNA:   3'- uUCGcCCGCuCGAGCAGCaGGU--CUGG- -5'
10950 3' -59.1 NC_002794.1 + 19450 0.67 0.783453
Target:  5'- cGAGCGGGCacGAGCggCGgcggCGgCgGGACCc -3'
miRNA:   3'- -UUCGCCCG--CUCGa-GCa---GCaGgUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 86689 0.67 0.774506
Target:  5'- cGAGCGGGacCGAgcccggucGCUCGUCGaagCCGcccGGCCa -3'
miRNA:   3'- -UUCGCCC--GCU--------CGAGCAGCa--GGU---CUGG- -5'
10950 3' -59.1 NC_002794.1 + 24084 0.67 0.774506
Target:  5'- --cCGGGCGGGCgUCGcCGUauuaaAGACCg -3'
miRNA:   3'- uucGCCCGCUCG-AGCaGCAgg---UCUGG- -5'
10950 3' -59.1 NC_002794.1 + 138825 0.67 0.76544
Target:  5'- -cGCGGucuCGAGCUCG-CGaCCGGGCUc -3'
miRNA:   3'- uuCGCCc--GCUCGAGCaGCaGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 149072 0.67 0.76544
Target:  5'- cGAGCGGGUGgucaAGCUCGcCGagaguuUCCGGGgCu -3'
miRNA:   3'- -UUCGCCCGC----UCGAGCaGC------AGGUCUgG- -5'
10950 3' -59.1 NC_002794.1 + 113379 0.68 0.756264
Target:  5'- -uGCGGGCc-GC-CGUCGUgCAGGCg -3'
miRNA:   3'- uuCGCCCGcuCGaGCAGCAgGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 142632 0.68 0.756264
Target:  5'- cAGCGcGaGCcgcagGGGCUCGUCGgguuUCCAGACg -3'
miRNA:   3'- uUCGC-C-CG-----CUCGAGCAGC----AGGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 115340 0.68 0.756264
Target:  5'- --cCGGGCc-GCUCGgcaCGUCCAGGCg -3'
miRNA:   3'- uucGCCCGcuCGAGCa--GCAGGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.