miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10950 3' -59.1 NC_002794.1 + 10646 0.72 0.514223
Target:  5'- gGAGCGGcGCGAGCcCGacgagCGUCUGGAgCCg -3'
miRNA:   3'- -UUCGCC-CGCUCGaGCa----GCAGGUCU-GG- -5'
10950 3' -59.1 NC_002794.1 + 19450 0.67 0.783453
Target:  5'- cGAGCGGGCacGAGCggCGgcggCGgCgGGACCc -3'
miRNA:   3'- -UUCGCCCG--CUCGa-GCa---GCaGgUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 21551 0.74 0.372692
Target:  5'- gGAGCGGGgaaaaaguccuccuCGGGUUCGUCGUgCGcGACCg -3'
miRNA:   3'- -UUCGCCC--------------GCUCGAGCAGCAgGU-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 21934 0.73 0.45919
Target:  5'- cGGCGGcGCGGcGCUCGUCGaaggCCGucGGCCg -3'
miRNA:   3'- uUCGCC-CGCU-CGAGCAGCa---GGU--CUGG- -5'
10950 3' -59.1 NC_002794.1 + 23922 0.66 0.849845
Target:  5'- -cGUGGGCGAGCgagCGaUCcgagCCcGGCCg -3'
miRNA:   3'- uuCGCCCGCUCGa--GC-AGca--GGuCUGG- -5'
10950 3' -59.1 NC_002794.1 + 24084 0.67 0.774506
Target:  5'- --cCGGGCGGGCgUCGcCGUauuaaAGACCg -3'
miRNA:   3'- uucGCCCGCUCG-AGCaGCAgg---UCUGG- -5'
10950 3' -59.1 NC_002794.1 + 26185 0.66 0.824505
Target:  5'- -cGCGGGagcggugacgauuuuUGAucagcacacccucacGCUCGUCGUCCGaGCCg -3'
miRNA:   3'- uuCGCCC---------------GCU---------------CGAGCAGCAGGUcUGG- -5'
10950 3' -59.1 NC_002794.1 + 26271 0.71 0.571755
Target:  5'- -uGgGGGCG-GCUCGaUCG-CCGGAUCg -3'
miRNA:   3'- uuCgCCCGCuCGAGC-AGCaGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 31999 0.68 0.718625
Target:  5'- -cGUGGGCGAGC-CGaCG--CAGACCa -3'
miRNA:   3'- uuCGCCCGCUCGaGCaGCagGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 33704 0.71 0.571755
Target:  5'- uGGCGGGCGAGC-CGcUgGUCUAcGACg -3'
miRNA:   3'- uUCGCCCGCUCGaGC-AgCAGGU-CUGg -5'
10950 3' -59.1 NC_002794.1 + 34084 0.7 0.640557
Target:  5'- cGGCGGcCGGGCagcCGUCGggcggcCCGGACCg -3'
miRNA:   3'- uUCGCCcGCUCGa--GCAGCa-----GGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 36292 0.68 0.737616
Target:  5'- -uGCGGGUgcacGAGCUCGcC--CCGGACCc -3'
miRNA:   3'- uuCGCCCG----CUCGAGCaGcaGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 37142 0.71 0.581514
Target:  5'- cGGGUcgaGGGCGcAGCUCcaGUCGcUCCGGAUCg -3'
miRNA:   3'- -UUCG---CCCGC-UCGAG--CAGC-AGGUCUGG- -5'
10950 3' -59.1 NC_002794.1 + 37768 0.66 0.849845
Target:  5'- cGGCGGGagcGGC-CGUCGUCgucGGCCg -3'
miRNA:   3'- uUCGCCCgc-UCGaGCAGCAGgu-CUGG- -5'
10950 3' -59.1 NC_002794.1 + 44175 0.73 0.424294
Target:  5'- cGAGC-GGCG-GCUCGUCGacUCCGGGCg -3'
miRNA:   3'- -UUCGcCCGCuCGAGCAGC--AGGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 44364 0.72 0.486337
Target:  5'- aGAGCGcGGCGGGCgCGaCGUCCGcGACg -3'
miRNA:   3'- -UUCGC-CCGCUCGaGCaGCAGGU-CUGg -5'
10950 3' -59.1 NC_002794.1 + 45463 0.66 0.852885
Target:  5'- cAGCGGGCccagggucccGAGCUCGgccuccgccguccacUCGUagcCCAGAUa -3'
miRNA:   3'- uUCGCCCG----------CUCGAGC---------------AGCA---GGUCUGg -5'
10950 3' -59.1 NC_002794.1 + 56515 0.66 0.842118
Target:  5'- -cGCGGGCGcuccggcGCUCGU--UCCGGucGCCa -3'
miRNA:   3'- uuCGCCCGCu------CGAGCAgcAGGUC--UGG- -5'
10950 3' -59.1 NC_002794.1 + 61900 0.69 0.660263
Target:  5'- cGAGCGcGGCGAGCgcagcgaCGUCGUCacccucgaggAGAUCg -3'
miRNA:   3'- -UUCGC-CCGCUCGa------GCAGCAGg---------UCUGG- -5'
10950 3' -59.1 NC_002794.1 + 62436 0.66 0.815399
Target:  5'- cGAGCGuccucgacacgcacGGCGAGUUCGUCcUCCucgAGGCg -3'
miRNA:   3'- -UUCGC--------------CCGCUCGAGCAGcAGG---UCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.