miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10950 5' -51.9 NC_002794.1 + 110726 0.66 0.995371
Target:  5'- gAGGUCGggGGGUCUCuccagaugcugucgGAGCuuGCgCAGCu -3'
miRNA:   3'- gUCCAGCa-UCUAGAG--------------CUUG--UGgGUCG- -5'
10950 5' -51.9 NC_002794.1 + 120276 0.66 0.994862
Target:  5'- aGGGcUUGcUGGAgCUCGAGCACgCCgAGCc -3'
miRNA:   3'- gUCC-AGC-AUCUaGAGCUUGUG-GG-UCG- -5'
10950 5' -51.9 NC_002794.1 + 131017 0.66 0.994862
Target:  5'- aCGGGUCGguGGUCgugCGGcGCGgCCGGCu -3'
miRNA:   3'- -GUCCAGCauCUAGa--GCU-UGUgGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 181545 0.66 0.994058
Target:  5'- gCGGGcCGgcGcUCUCGGuCGCCgGGCc -3'
miRNA:   3'- -GUCCaGCauCuAGAGCUuGUGGgUCG- -5'
10950 5' -51.9 NC_002794.1 + 104683 0.66 0.994058
Target:  5'- --cGUCGUGGucugguUCUUGAGCAUgaagaCCGGCg -3'
miRNA:   3'- gucCAGCAUCu-----AGAGCUUGUG-----GGUCG- -5'
10950 5' -51.9 NC_002794.1 + 32925 0.66 0.993155
Target:  5'- gCAGGUCGgcgGGAagcgCUCG-GCGgCCAGg -3'
miRNA:   3'- -GUCCAGCa--UCUa---GAGCuUGUgGGUCg -5'
10950 5' -51.9 NC_002794.1 + 36991 0.66 0.992145
Target:  5'- gCAGGUCGgcGAgg-CGG--ACCCGGUa -3'
miRNA:   3'- -GUCCAGCauCUagaGCUugUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 112391 0.67 0.991021
Target:  5'- gCAGGgCGgcGAUCUUGGcGCGCUgCAGCc -3'
miRNA:   3'- -GUCCaGCauCUAGAGCU-UGUGG-GUCG- -5'
10950 5' -51.9 NC_002794.1 + 153924 0.67 0.991021
Target:  5'- aCAGGUCcgcGAUCgccgCGGACACUCgcuGGCu -3'
miRNA:   3'- -GUCCAGcauCUAGa---GCUUGUGGG---UCG- -5'
10950 5' -51.9 NC_002794.1 + 54602 0.67 0.99066
Target:  5'- cCAGGcCGUGGAUauccagCGAcgaguuacuguugcACACCgCGGCg -3'
miRNA:   3'- -GUCCaGCAUCUAga----GCU--------------UGUGG-GUCG- -5'
10950 5' -51.9 NC_002794.1 + 195062 0.67 0.99066
Target:  5'- aCAGGUCGaAGA---UGAACAcgcggaaaccgugcCCCAGCa -3'
miRNA:   3'- -GUCCAGCaUCUagaGCUUGU--------------GGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 135699 0.67 0.989774
Target:  5'- -cGGUCuccagGUAGcgCUCGAGCugCUgcguAGCa -3'
miRNA:   3'- guCCAG-----CAUCuaGAGCUUGugGG----UCG- -5'
10950 5' -51.9 NC_002794.1 + 116955 0.67 0.989774
Target:  5'- gCGGcGUCGgcgGGcgCagGAACggGCCCAGCa -3'
miRNA:   3'- -GUC-CAGCa--UCuaGagCUUG--UGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 102169 0.67 0.988395
Target:  5'- cCGGGgccaUCGUGGcgCgcggCGAGgACCUGGCg -3'
miRNA:   3'- -GUCC----AGCAUCuaGa---GCUUgUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 151069 0.67 0.986877
Target:  5'- gCAGGUCGcGGAUUUCcuGAGCagucACCC-GCg -3'
miRNA:   3'- -GUCCAGCaUCUAGAG--CUUG----UGGGuCG- -5'
10950 5' -51.9 NC_002794.1 + 55911 0.67 0.986877
Target:  5'- --aGUCGUcGAUCUCGGGCACggUCAGg -3'
miRNA:   3'- gucCAGCAuCUAGAGCUUGUG--GGUCg -5'
10950 5' -51.9 NC_002794.1 + 43755 0.67 0.986877
Target:  5'- uGGGUgcCGUuccgcagcagccAGAUCUcgcCGAACGCCCcGCg -3'
miRNA:   3'- gUCCA--GCA------------UCUAGA---GCUUGUGGGuCG- -5'
10950 5' -51.9 NC_002794.1 + 189475 0.67 0.986877
Target:  5'- aAGGcCGcGGGcgUCGuguGCACCCAGCu -3'
miRNA:   3'- gUCCaGCaUCUagAGCu--UGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 180662 0.67 0.985209
Target:  5'- gCAGGgCGUgccggGGAaCUCGccggccgcucccGGCGCCCGGCg -3'
miRNA:   3'- -GUCCaGCA-----UCUaGAGC------------UUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 105267 0.67 0.985209
Target:  5'- gAGGcUGUAG---UCGAGCAgCCAGCg -3'
miRNA:   3'- gUCCaGCAUCuagAGCUUGUgGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.