miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10950 5' -51.9 NC_002794.1 + 72389 0.67 0.985209
Target:  5'- --cGUCGUcuuGAaCUCGAGCACgUAGCa -3'
miRNA:   3'- gucCAGCAu--CUaGAGCUUGUGgGUCG- -5'
10950 5' -51.9 NC_002794.1 + 136096 0.68 0.979233
Target:  5'- gAGG-CGUAGAcgUCGGcguccuGCACCUGGCg -3'
miRNA:   3'- gUCCaGCAUCUagAGCU------UGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 35248 0.68 0.979233
Target:  5'- -uGGUCGaccucaAGAUCUCGAACcUgCGGCu -3'
miRNA:   3'- guCCAGCa-----UCUAGAGCUUGuGgGUCG- -5'
10950 5' -51.9 NC_002794.1 + 189167 0.68 0.971629
Target:  5'- gCAGGUCGUAGA-CguaGAugGCCgCGuGCg -3'
miRNA:   3'- -GUCCAGCAUCUaGag-CUugUGG-GU-CG- -5'
10950 5' -51.9 NC_002794.1 + 141109 0.68 0.971345
Target:  5'- -cGGUCGUGGGa--CGAACcgccgccACCCGGCu -3'
miRNA:   3'- guCCAGCAUCUagaGCUUG-------UGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 5231 0.69 0.965558
Target:  5'- uUAGGcaUCGgAGA-CUCGGACGUCCAGCu -3'
miRNA:   3'- -GUCC--AGCaUCUaGAGCUUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 124116 0.69 0.962202
Target:  5'- cCGGGUCGacucgAGAgcgcgUCUCcGGCGCCCGGg -3'
miRNA:   3'- -GUCCAGCa----UCU-----AGAGcUUGUGGGUCg -5'
10950 5' -51.9 NC_002794.1 + 82129 0.69 0.958626
Target:  5'- -cGG-CGUGGGcgUCacgugggCGGACACCCGGCc -3'
miRNA:   3'- guCCaGCAUCU--AGa------GCUUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 116106 0.69 0.958626
Target:  5'- gGGGUCG-AGGUCgaggUCGAGucCGCCgCGGCg -3'
miRNA:   3'- gUCCAGCaUCUAG----AGCUU--GUGG-GUCG- -5'
10950 5' -51.9 NC_002794.1 + 190862 0.69 0.954825
Target:  5'- gCGGGUCGUAca---CGuACACCCGGCu -3'
miRNA:   3'- -GUCCAGCAUcuagaGCuUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 141802 0.7 0.950793
Target:  5'- gCGGGUCGgc---CUCGGACAgCCGGUu -3'
miRNA:   3'- -GUCCAGCaucuaGAGCUUGUgGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 142876 0.7 0.946528
Target:  5'- uCGGGUUGUAGAgaaagCGGcagGCguGCCCGGCg -3'
miRNA:   3'- -GUCCAGCAUCUaga--GCU---UG--UGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 31968 0.7 0.932306
Target:  5'- --uGUCGUAcGAcgUCUCGAGCGCCuCGGUc -3'
miRNA:   3'- gucCAGCAU-CU--AGAGCUUGUGG-GUCG- -5'
10950 5' -51.9 NC_002794.1 + 68763 0.7 0.932306
Target:  5'- cCGGGcCGccggGGcgC-CGGACGCCCGGCu -3'
miRNA:   3'- -GUCCaGCa---UCuaGaGCUUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 188616 0.71 0.909966
Target:  5'- gCAGGUgugcgaaaaCGUcucgcggacccGGGUCUUGAGCAgCCCGGCc -3'
miRNA:   3'- -GUCCA---------GCA-----------UCUAGAGCUUGU-GGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 114627 0.71 0.90378
Target:  5'- gCAGGUCcucggcgcGGAgCUCGAGCugCCGGUg -3'
miRNA:   3'- -GUCCAGca------UCUaGAGCUUGugGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 118367 0.72 0.897358
Target:  5'- uCAGGUCGcggUAGAgauacugccgCUCGGcgGCGCUCAGCc -3'
miRNA:   3'- -GUCCAGC---AUCUa---------GAGCU--UGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 114794 0.72 0.897358
Target:  5'- cCAGGUUGUcucgcAGGUCcCGGAgGCCCGcGCg -3'
miRNA:   3'- -GUCCAGCA-----UCUAGaGCUUgUGGGU-CG- -5'
10950 5' -51.9 NC_002794.1 + 57708 0.72 0.883817
Target:  5'- aAGaaCGUGGcgCUCGAGCACCUgcGGCg -3'
miRNA:   3'- gUCcaGCAUCuaGAGCUUGUGGG--UCG- -5'
10950 5' -51.9 NC_002794.1 + 145948 0.72 0.869373
Target:  5'- -cGGUUcgGGAgUCgCGAGCGCCCAGCg -3'
miRNA:   3'- guCCAGcaUCU-AGaGCUUGUGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.