miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10950 5' -51.9 NC_002794.1 + 5231 0.69 0.965558
Target:  5'- uUAGGcaUCGgAGA-CUCGGACGUCCAGCu -3'
miRNA:   3'- -GUCC--AGCaUCUaGAGCUUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 30911 0.76 0.707678
Target:  5'- cCAGGUCGgAGAUCUCGcucuccaggcuGCGCCCGccGCg -3'
miRNA:   3'- -GUCCAGCaUCUAGAGCu----------UGUGGGU--CG- -5'
10950 5' -51.9 NC_002794.1 + 31968 0.7 0.932306
Target:  5'- --uGUCGUAcGAcgUCUCGAGCGCCuCGGUc -3'
miRNA:   3'- gucCAGCAU-CU--AGAGCUUGUGG-GUCG- -5'
10950 5' -51.9 NC_002794.1 + 32925 0.66 0.993155
Target:  5'- gCAGGUCGgcgGGAagcgCUCG-GCGgCCAGg -3'
miRNA:   3'- -GUCCAGCa--UCUa---GAGCuUGUgGGUCg -5'
10950 5' -51.9 NC_002794.1 + 35248 0.68 0.979233
Target:  5'- -uGGUCGaccucaAGAUCUCGAACcUgCGGCu -3'
miRNA:   3'- guCCAGCa-----UCUAGAGCUUGuGgGUCG- -5'
10950 5' -51.9 NC_002794.1 + 36991 0.66 0.992145
Target:  5'- gCAGGUCGgcGAgg-CGG--ACCCGGUa -3'
miRNA:   3'- -GUCCAGCauCUagaGCUugUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 43755 0.67 0.986877
Target:  5'- uGGGUgcCGUuccgcagcagccAGAUCUcgcCGAACGCCCcGCg -3'
miRNA:   3'- gUCCA--GCA------------UCUAGA---GCUUGUGGGuCG- -5'
10950 5' -51.9 NC_002794.1 + 54602 0.67 0.99066
Target:  5'- cCAGGcCGUGGAUauccagCGAcgaguuacuguugcACACCgCGGCg -3'
miRNA:   3'- -GUCCaGCAUCUAga----GCU--------------UGUGG-GUCG- -5'
10950 5' -51.9 NC_002794.1 + 55911 0.67 0.986877
Target:  5'- --aGUCGUcGAUCUCGGGCACggUCAGg -3'
miRNA:   3'- gucCAGCAuCUAGAGCUUGUG--GGUCg -5'
10950 5' -51.9 NC_002794.1 + 57708 0.72 0.883817
Target:  5'- aAGaaCGUGGcgCUCGAGCACCUgcGGCg -3'
miRNA:   3'- gUCcaGCAUCuaGAGCUUGUGGG--UCG- -5'
10950 5' -51.9 NC_002794.1 + 68763 0.7 0.932306
Target:  5'- cCGGGcCGccggGGcgC-CGGACGCCCGGCu -3'
miRNA:   3'- -GUCCaGCa---UCuaGaGCUUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 72389 0.67 0.985209
Target:  5'- --cGUCGUcuuGAaCUCGAGCACgUAGCa -3'
miRNA:   3'- gucCAGCAu--CUaGAGCUUGUGgGUCG- -5'
10950 5' -51.9 NC_002794.1 + 82129 0.69 0.958626
Target:  5'- -cGG-CGUGGGcgUCacgugggCGGACACCCGGCc -3'
miRNA:   3'- guCCaGCAUCU--AGa------GCUUGUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 102169 0.67 0.988395
Target:  5'- cCGGGgccaUCGUGGcgCgcggCGAGgACCUGGCg -3'
miRNA:   3'- -GUCC----AGCAUCuaGa---GCUUgUGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 104683 0.66 0.994058
Target:  5'- --cGUCGUGGucugguUCUUGAGCAUgaagaCCGGCg -3'
miRNA:   3'- gucCAGCAUCu-----AGAGCUUGUG-----GGUCG- -5'
10950 5' -51.9 NC_002794.1 + 105267 0.67 0.985209
Target:  5'- gAGGcUGUAG---UCGAGCAgCCAGCg -3'
miRNA:   3'- gUCCaGCAUCuagAGCUUGUgGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 110726 0.66 0.995371
Target:  5'- gAGGUCGggGGGUCUCuccagaugcugucgGAGCuuGCgCAGCu -3'
miRNA:   3'- gUCCAGCa-UCUAGAG--------------CUUG--UGgGUCG- -5'
10950 5' -51.9 NC_002794.1 + 112391 0.67 0.991021
Target:  5'- gCAGGgCGgcGAUCUUGGcGCGCUgCAGCc -3'
miRNA:   3'- -GUCCaGCauCUAGAGCU-UGUGG-GUCG- -5'
10950 5' -51.9 NC_002794.1 + 112764 0.74 0.81237
Target:  5'- gGGGUCGgggugAGGUCUCGGaggacgucccGCacgaacgccgccGCCCAGCg -3'
miRNA:   3'- gUCCAGCa----UCUAGAGCU----------UG------------UGGGUCG- -5'
10950 5' -51.9 NC_002794.1 + 113629 0.77 0.656749
Target:  5'- uCAGGUUGaacGUCUCGAGCagcgGCCCGGCg -3'
miRNA:   3'- -GUCCAGCaucUAGAGCUUG----UGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.