miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10951 3' -57.3 NC_002794.1 + 119490 0.65 0.914413
Target:  5'- gUCGGCUGCGUCCuCGgggucgucggcggcGCGGAGcCGGc- -3'
miRNA:   3'- -AGCCGGUGCAGG-GC--------------UGUCUCuGUCau -5'
10951 3' -57.3 NC_002794.1 + 113533 0.66 0.910358
Target:  5'- cCGGCUcgGCGUCgCCGGCccGGAG-CAGg- -3'
miRNA:   3'- aGCCGG--UGCAG-GGCUG--UCUCuGUCau -5'
10951 3' -57.3 NC_002794.1 + 38587 0.66 0.910358
Target:  5'- gUCGGCCGCcuccUCCCGgACgAGAGGCcGg- -3'
miRNA:   3'- -AGCCGGUGc---AGGGC-UG-UCUCUGuCau -5'
10951 3' -57.3 NC_002794.1 + 49822 0.66 0.910358
Target:  5'- gCGGCCACGUCUgauaGGC-GAGGCGc-- -3'
miRNA:   3'- aGCCGGUGCAGGg---CUGuCUCUGUcau -5'
10951 3' -57.3 NC_002794.1 + 33430 0.66 0.910358
Target:  5'- cUCGGgCugGUCCCGguGCAGgaccucGGGCGGc- -3'
miRNA:   3'- -AGCCgGugCAGGGC--UGUC------UCUGUCau -5'
10951 3' -57.3 NC_002794.1 + 47790 0.66 0.90977
Target:  5'- gCGGCCGCaguacacgGUCUCGGCgaacaggcggacgAGGGACGGg- -3'
miRNA:   3'- aGCCGGUG--------CAGGGCUG-------------UCUCUGUCau -5'
10951 3' -57.3 NC_002794.1 + 47943 0.66 0.904373
Target:  5'- aUCGGCgccgCGCGUCCCGGCGccGGCuGg- -3'
miRNA:   3'- -AGCCG----GUGCAGGGCUGUcuCUGuCau -5'
10951 3' -57.3 NC_002794.1 + 180909 0.66 0.904373
Target:  5'- cUCGGCCGCGgucUCgCCGGCgccgucGGAGGuCGGUc -3'
miRNA:   3'- -AGCCGGUGC---AG-GGCUG------UCUCU-GUCAu -5'
10951 3' -57.3 NC_002794.1 + 142132 0.66 0.904373
Target:  5'- gCGGCCGaccgccggGUCaCGGCGGAGGCGGc- -3'
miRNA:   3'- aGCCGGUg-------CAGgGCUGUCUCUGUCau -5'
10951 3' -57.3 NC_002794.1 + 14686 0.66 0.904373
Target:  5'- gCGGUCGCGcugcUCCUGACGGcGugGGg- -3'
miRNA:   3'- aGCCGGUGC----AGGGCUGUCuCugUCau -5'
10951 3' -57.3 NC_002794.1 + 100379 0.66 0.898166
Target:  5'- gUGGCCgACGUCCgCGGCGuGGACGacGUGg -3'
miRNA:   3'- aGCCGG-UGCAGG-GCUGUcUCUGU--CAU- -5'
10951 3' -57.3 NC_002794.1 + 105781 0.66 0.898166
Target:  5'- -gGGCCGCGUCgauaggUCGGucuCGGAGACGGa- -3'
miRNA:   3'- agCCGGUGCAG------GGCU---GUCUCUGUCau -5'
10951 3' -57.3 NC_002794.1 + 130666 0.66 0.895621
Target:  5'- cCGGCCGCGggcuccgccgcggCCuCGugGGAGGCGccGUGu -3'
miRNA:   3'- aGCCGGUGCa------------GG-GCugUCUCUGU--CAU- -5'
10951 3' -57.3 NC_002794.1 + 140024 0.66 0.891738
Target:  5'- -aGGCCGCGgccCCCG-CGGGcGGCGGg- -3'
miRNA:   3'- agCCGGUGCa--GGGCuGUCU-CUGUCau -5'
10951 3' -57.3 NC_002794.1 + 92252 0.66 0.891738
Target:  5'- cUCGGCgGCGUCgCUGGCGGcGGCGc-- -3'
miRNA:   3'- -AGCCGgUGCAG-GGCUGUCuCUGUcau -5'
10951 3' -57.3 NC_002794.1 + 156037 0.66 0.891738
Target:  5'- --cGUCGCGUCgCgCGACGGGGGCAGc- -3'
miRNA:   3'- agcCGGUGCAG-G-GCUGUCUCUGUCau -5'
10951 3' -57.3 NC_002794.1 + 140104 0.66 0.885093
Target:  5'- gUCGGCgGCGaUCgaCGGCGGucGACGGUGg -3'
miRNA:   3'- -AGCCGgUGC-AGg-GCUGUCu-CUGUCAU- -5'
10951 3' -57.3 NC_002794.1 + 126671 0.66 0.885093
Target:  5'- -gGGCCGCGgcgagggCCCGAauCGGGGAgGGa- -3'
miRNA:   3'- agCCGGUGCa------GGGCU--GUCUCUgUCau -5'
10951 3' -57.3 NC_002794.1 + 47642 0.66 0.885093
Target:  5'- aCGGCacgugguCGUCCCGAacgaucGGACAGUGg -3'
miRNA:   3'- aGCCGgu-----GCAGGGCUguc---UCUGUCAU- -5'
10951 3' -57.3 NC_002794.1 + 94492 0.67 0.878235
Target:  5'- gCGGCCGCGggCCgUGGCGGGGAUg--- -3'
miRNA:   3'- aGCCGGUGCa-GG-GCUGUCUCUGucau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.