miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10951 5' -57.4 NC_002794.1 + 131020 0.66 0.916145
Target:  5'- gGUCgGUGGUCGU-GC---GGCGCGGCCg -3'
miRNA:   3'- -CAG-CGCCAGCAuCGgguCUGUGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 121974 0.66 0.916145
Target:  5'- -gUGCGGcUCGgucccGCCgAG-CGCGGCCg -3'
miRNA:   3'- caGCGCC-AGCau---CGGgUCuGUGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 156941 0.66 0.916145
Target:  5'- -cCGCGaGUCGgGGCCuCGGAgAUgauuGGCCg -3'
miRNA:   3'- caGCGC-CAGCaUCGG-GUCUgUG----UCGG- -5'
10951 5' -57.4 NC_002794.1 + 54253 0.66 0.916145
Target:  5'- -gCGCGGUccacggcgccgCGUcgGGCCaaaccgugCAGACGCAGCa -3'
miRNA:   3'- caGCGCCA-----------GCA--UCGG--------GUCUGUGUCGg -5'
10951 5' -57.4 NC_002794.1 + 49267 0.66 0.916145
Target:  5'- -aCGaCGGgCGcuccaacGGCCCGGGCGCcGCCg -3'
miRNA:   3'- caGC-GCCaGCa------UCGGGUCUGUGuCGG- -5'
10951 5' -57.4 NC_002794.1 + 108616 0.66 0.915582
Target:  5'- gGUCGCGGUgGUGuGUCggaacugCGGGCACuGCUu -3'
miRNA:   3'- -CAGCGCCAgCAU-CGG-------GUCUGUGuCGG- -5'
10951 5' -57.4 NC_002794.1 + 135840 0.66 0.914449
Target:  5'- cGUCG-GcGUCGUccggaugaauccgcGGCCCAGAa--AGCCg -3'
miRNA:   3'- -CAGCgC-CAGCA--------------UCGGGUCUgugUCGG- -5'
10951 5' -57.4 NC_002794.1 + 119074 0.66 0.910412
Target:  5'- cGUCGCGGacguacUCGgcGCCCGGuuGCuGGUg -3'
miRNA:   3'- -CAGCGCC------AGCauCGGGUCugUG-UCGg -5'
10951 5' -57.4 NC_002794.1 + 114076 0.66 0.910412
Target:  5'- cUCGCGGUCGUgAGCCacgaAGAagucgACgAGCUc -3'
miRNA:   3'- cAGCGCCAGCA-UCGGg---UCUg----UG-UCGG- -5'
10951 5' -57.4 NC_002794.1 + 82443 0.66 0.910412
Target:  5'- cUCGCGGcUCGgcacggucGGCCCGaccucGACGCcgucGGCCu -3'
miRNA:   3'- cAGCGCC-AGCa-------UCGGGU-----CUGUG----UCGG- -5'
10951 5' -57.4 NC_002794.1 + 37756 0.66 0.910412
Target:  5'- -gCGCGG-CGgcGCCggCGGGaGCGGCCg -3'
miRNA:   3'- caGCGCCaGCauCGG--GUCUgUGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 187384 0.66 0.910412
Target:  5'- -cCGCcGaccCGUGGCaCAGAUACAGCCc -3'
miRNA:   3'- caGCGcCa--GCAUCGgGUCUGUGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 143251 0.66 0.910412
Target:  5'- cGUCGUGGUgcaGgaggaaGGCCCGGcccgGCGcCGGCCg -3'
miRNA:   3'- -CAGCGCCAg--Ca-----UCGGGUC----UGU-GUCGG- -5'
10951 5' -57.4 NC_002794.1 + 146163 0.66 0.906864
Target:  5'- uGUCGcCGGccuaucaggagcgcuUCGaGGCCgAGGCGCGGgCCu -3'
miRNA:   3'- -CAGC-GCC---------------AGCaUCGGgUCUGUGUC-GG- -5'
10951 5' -57.4 NC_002794.1 + 180888 0.66 0.904455
Target:  5'- -gCGCccGGUCucGGCCgCGGACuCGGCCg -3'
miRNA:   3'- caGCG--CCAGcaUCGG-GUCUGuGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 113818 0.66 0.903847
Target:  5'- uUCGCGG-CGgcGCUCGGcCuccaggugcuucuGCAGCCu -3'
miRNA:   3'- cAGCGCCaGCauCGGGUCuG-------------UGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 66869 0.66 0.898277
Target:  5'- -cCGCGG-CGUgcGGCUgAGccauCGCGGCCg -3'
miRNA:   3'- caGCGCCaGCA--UCGGgUCu---GUGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 81760 0.66 0.898277
Target:  5'- aUCGCGcUCaagcAGCUCcGGCACGGCCg -3'
miRNA:   3'- cAGCGCcAGca--UCGGGuCUGUGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 112193 0.66 0.898277
Target:  5'- uGUCGaGGUaCGUcuGCCCguGGAgCACGGCCc -3'
miRNA:   3'- -CAGCgCCA-GCAu-CGGG--UCU-GUGUCGG- -5'
10951 5' -57.4 NC_002794.1 + 45715 0.66 0.897647
Target:  5'- aUUGUGGUCcaacAGCCCGGGCgucuccacguagcGCAGCg -3'
miRNA:   3'- cAGCGCCAGca--UCGGGUCUG-------------UGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.